i-Motif of cytosine-rich human telomere DNA fragments containing natural base lesions

The Consequences of Overlapping G-Quadruplexes and i-Motifs in the Platelet-Derived Growth Factor Receptor β Core Promoter Nuclease Hypersensitive Element Can Explain the Unexpected Effects of Mutations and Provide Opportunities for Selective Targeting of Both Structures by Small Molecules To Downregulate Gene Expression

(2017) Robert V. Brown et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Insight into the Complexity of the i-Motif and G-Quadruplex DNA Structures Formed in the KRAS Promoter and Subsequent Drug-Induced Gene Repression

(2017) Christine E. Kaiser et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Clustered abasic lesions profoundly change the structure and stability of human telomeric G-quadruplexes

(2017) Iva Kejnovská et al.   NUCLEIC ACIDS RESEARCH

APOBEC3A efficiently deaminates methylated, but not TET-oxidized, cytosine bases in DNA

(2017) Emily K. Schutsky et al.   NUCLEIC ACIDS RESEARCH

Identification of multiple genomic DNA sequences which form i-motif structures at neutral pH

(2017) Elisé P. Wright et al.   NUCLEIC ACIDS RESEARCH

Loop Sequence Context Influences the Formation and Stability of the i-Motif for DNA Oligomers of Sequence (CCCXXX)4, where X = A and/or T, under Slightly Acidic Conditions

(2016) Mikeal McKim et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Understanding the effect of the nature of the nucleobase in the loops on the stability of the i-motif structure

(2016) Sanae Benabou et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Effect of Interior Loop Length on the Thermal Stability and pKa of i-Motif DNA

(2015) Samantha M. Reilly et al.   BIOCHEMISTRY

Diverse effects of naturally occurring base lesions on the structure and stability of the human telomere DNA quadruplex

(2015) Helena Konvalinová et al.   BIOCHIMIE

Tuning the pH Response of i-Motif DNA Oligonucleotides

(2015) Laurie Lannes et al.   CHEMBIOCHEM

The importance of loop length on the stability of i-motif structures

(2015) Sarah P. Gurung et al.   CHEMICAL COMMUNICATIONS

Base-Pairing Energies of Protonated Nucleoside Base Pairs of dCyd and m5dCyd: Implications for the Stability of DNA i-Motif Conformations

(2015) Bo Yang et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Unique C. elegans telomeric overhang structures reveal the evolutionarily conserved properties of telomeric DNA

(2015) Petra Školáková et al.   NUCLEIC ACIDS RESEARCH

The oxidative damage to the human telomere: effects of 5-hydroxymethyl-2′-deoxyuridine on telomeric G-quadruplex structures

(2015) Antonella Virgilio et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Regulation of telomeric i-motif stability by 5-methylcytosine and 5-hydroxymethylcytosine modification

(2015) Baochang Xu et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Loop nucleotides impact the stability of intrastrand i-motif structures at neutral pH

(2015) Taiga Fujii et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

DNA Nanotechnology Based on i-Motif Structures

(2014) Yuanchen Dong et al.   ACCOUNTS OF CHEMICAL RESEARCH

Epigenetic Modification, Dehydration, and Molecular Crowding Effects on the Thermodynamics of i-Motif Structure Formation from C-Rich DNA

(2014) Yogini P. Bhavsar-Jog et al.   BIOCHEMISTRY

i-Motif DNA: Structure, stability and targeting with ligands

(2014) Henry A. Day et al.   BIOORGANIC & MEDICINAL CHEMISTRY

The Transcriptional Complex Between the BCL2 i-Motif and hnRNP LL Is a Molecular Switch for Control of Gene Expression That Can Be Modulated by Small Molecules

(2014) Hyun-Jin Kang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Rational Design of Highly Responsive pH Sensors Based on DNA i-Motif

(2014) Irina V. Nesterova et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA

(2014) Toni Pfaffeneder et al.   Nature Chemical Biology

Loss of loop adenines alters human telomere d[AG3(TTAG3)3] quadruplex folding

(2014) Martin Babinský et al.   NUCLEIC ACIDS RESEARCH

Fundamental aspects of the nucleic acid i-motif structures

(2014) S. Benabou et al.   RSC Advances

Optimizing the Kinetics and Thermodynamics of DNA i-Motif Folding

(2013) Anna Lena Lieblein et al.   CHEMBIOCHEM

Unlocked Nucleic Acids with a Pyrene-Modified Uracil: Synthesis, Hybridization Studies, Fluorescent Properties and i-Motif Stability

(2013) Pavla Perlíková et al.   CHEMBIOCHEM

G-quadruplexes incorporating modified constituents: a review

(2013) Janos Sagi   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

The Effect of Molecular Crowding on the Stability of Human c-MYC Promoter Sequence I-Motif at Neutral pH

(2013) Jingjing Cui et al.   MOLECULES

8-Oxo-7,8-dihydrodeoxyadenosine: The first example of a native DNA lesion that stabilizes human telomeric G-quadruplex DNA

(2012) Manali Aggrawal et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The abasic site lesions in the human telomeric sequence d[TA(G3T2A)3G3]: A thermodynamic point of view

(2012) Antonella Virgilio et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

G-Quadruplex and i-Motif Are Mutually Exclusive in ILPR Double-Stranded DNA

(2012) Soma Dhakal et al.   BIOPHYSICAL JOURNAL

I-Motif formation in gene promoters: unusually stable formation in sequences complementary to known G-quadruplexes

(2012) John A. Brazier et al.   CHEMICAL COMMUNICATIONS

Time-Resolved NMR Spectroscopic Studies of DNA i-Motif Folding Reveal Kinetic Partitioning

(2011) Anna Lena Lieblein et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Monitoring i-motif transitions through the exciplex emission of a fluorescent probe incorporating two PyA units

(2011) Il Joon Lee et al.   CHEMICAL COMMUNICATIONS

8-Oxoguanine in a quadruplex of the human telomere DNA sequence

(2011) Michaela Vorlícková et al.   FEBS Journal

Quadruplexes of human telomere dG3(TTAG3)3 sequences containing guanine abasic sites

(2010) Petra Školáková et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Modulation of i-motif thermodynamic stability by the introduction of UNA (unlocked nucleic acid) monomers

(2010) Anna Pasternak et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

The Importance of Negative Superhelicity in Inducing the Formation of G-Quadruplex and i-Motif Structures in the c-Myc Promoter: Implications for Drug Targeting and Control of Gene Expression

(2009) Daekyu Sun et al.   JOURNAL OF MEDICINAL CHEMISTRY

Substitution of adenine for guanine in the quadruplex-forming human telomere DNA sequence G3(T2AG3)3

(2008) Martin Tomaško et al.   BIOCHIMIE