Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs

Cis -directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses

(2018) Saleh Tamim et al.   NEW PHYTOLOGIST

Biogenesis and regulatory hierarchy of phased small interfering RNAs in plants

(2018) Pingchuan Deng et al.   PLANT BIOTECHNOLOGY JOURNAL

AGO18b negatively regulates determinacy of spikelet meristems on the tassel central spike in maize

(2017) Wei Sun et al.   Journal of Integrative Plant Biology

Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways

(2016) Qili Fei et al.   JOURNAL OF EXPERIMENTAL BOTANY

Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis

(2016) Stefanie Dukowic-Schulze et al.   Frontiers in Plant Science

Genome-wide identification of endogenous RNA-directed DNA methylation loci associated with abundant 21-nucleotide siRNAs in Arabidopsis

(2016) Jian-Hua Zhao et al.   Scientific Reports

A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis

(2015) Jixian Zhai et al.   CELL

Evolution, functions, and mysteries of plant ARGONAUTE proteins

(2015) Han Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

(2015) Jixian Zhai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

(2015) Todd Blevins et al.   eLife

Towards a piRNA prediction using multiple kernel fusion and support vector machine

(2014) J. Brayet et al.   BIOINFORMATICS

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm

(2014) Supatcha Lertampaiporn et al.   NUCLEIC ACIDS RESEARCH

sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software

(2014) Atul Kakrana et al.   NUCLEIC ACIDS RESEARCH

Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs

(2014) Reina Komiya et al.   PLANT JOURNAL

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

Argonaute proteins: functional insights and emerging roles

(2013) Gunter Meister   NATURE REVIEWS GENETICS

Modular regulatory principles of large non-coding RNAs

(2012) Mitchell Guttman et al.   NATURE

Pervasive transcription – Lessons from yeast

(2011) Mathieu Tisseur et al.   BIOCHIMIE

A k-mer scheme to predict piRNAs and characterize locust piRNAs

(2011) Yi Zhang et al.   BIOINFORMATICS

Target-Mediated Protection of Endogenous MicroRNAs in C. elegans

(2011) Saibal Chatterjee et al.   DEVELOPMENTAL CELL

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

A Review of Ensemble Methods in Bioinformatics

(2010) Pengyi Yang et al.   Current Bioinformatics

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

(2008) K. Nobuta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA