Target-enrichment sequencing for detailed characterization of small RNAs

An integrated expression atlas of miRNAs and their promoters in human and mouse

(2017) Derek de Rie et al.   NATURE BIOTECHNOLOGY

Quantum-chemical insights from deep tensor neural networks

(2017) Kristof T. Schütt et al.   Nature Communications

Identifying cell-specific microRNA transcriptional start sites

(2016) Xu Hua et al.   BIOINFORMATICS

Communication by Extracellular Vesicles: Where We Are and Where We Need to Go

(2016) Mercedes Tkach et al.   CELL

Improved definition of the mouse transcriptome via targeted RNA sequencing

(2016) Giovanni Bussotti et al.   GENOME RESEARCH

Characterization of piRNAs across postnatal development in mouse brain

(2016) Yanal Ghosheh et al.   Scientific Reports

Identification of differentially expressed miRNAs in individual breast cancer patient and application in personalized medicine

(2016) F Peng et al.   Oncogenesis

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome

(2015) Bastian Fromm et al.   Annual Review of Genetics

Genome-wide discovery of human splicing branchpoints

(2015) Tim R. Mercer et al.   GENOME RESEARCH

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing

(2015) Michael B Clark et al.   NATURE METHODS

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Nucleotide sequence of miRNA precursor contributes to cleavage site selection by Dicer

(2015) Julia Starega-Roslan et al.   NUCLEIC ACIDS RESEARCH

Unravelling the transcriptomic landscape of the major phase II UDP-glucuronosyltransferase drug metabolizing pathway using targeted RNA sequencing

(2015) A Tourancheau et al.   PHARMACOGENOMICS JOURNAL

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals

(2015) U. Sharma et al.   SCIENCE

Mining diverse small RNA species in the deep transcriptome

(2015) Kasey C. Vickers et al.   TRENDS IN BIOCHEMICAL SCIENCES

siRNA Versus miRNA as Therapeutics for Gene Silencing

(2015) Jenny K W Lam et al.   Molecular Therapy-Nucleic Acids

Methodological challenges in utilizing miRNAs as circulating biomarkers

(2014) Leni Moldovan et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Targeted sequencing for gene discovery and quantification using RNA CaptureSeq

(2014) Tim R Mercer et al.   Nature Protocols

Quantitative and stoichiometric analysis of the microRNA content of exosomes

(2014) J. R. Chevillet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of human plasma-derived exosomal RNAs by deep sequencing

(2013) Xiaoyi Huang et al.   BMC GENOMICS

Mammalian 5′-Capped MicroRNA Precursors that Generate a Single MicroRNA

(2013) Mingyi Xie et al.   CELL

Integration of Genome-wide Approaches Identifies lncRNAs of Adult Neural Stem Cells and Their Progeny In Vivo

(2013) Alexander D. Ramos et al.   Cell Stem Cell

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

Biases in small RNA deep sequencing data

(2013) Carsten A. Raabe et al.   NUCLEIC ACIDS RESEARCH

RNA-Based Therapeutics: Current Progress and Future Prospects

(2012) John C. Burnett et al.   CHEMISTRY & BIOLOGY

IsomiRs – the overlooked repertoire in the dynamic microRNAome

(2012) Corine T. Neilsen et al.   TRENDS IN GENETICS

Potential pitfalls in microRNA profiling

(2012) Pauline Chugh et al.   Wiley Interdisciplinary Reviews-RNA

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Capped small RNAs and MOV10 in human hepatitis delta virus replication

(2008) Dirk Haussecker et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY