Heritability estimates from genomewide relatedness matrices in wild populations: Application to a passerine, using a small sample size

Inference of genetic architecture from chromosome partitioning analyses is sensitive to genome variation, sample size, heritability and effect size distribution

(2018) Petri Kemppainen et al.   Molecular Ecology Resources

Conserved G-matrices of morphological and life-history traits among continental and island blue tit populations

(2017) B Delahaie et al.   HEREDITY

Insights into the genetic architecture of morphological traits in two passerine bird species

(2017) C N S Silva et al.   HEREDITY

Pedigree reconstruction from SNP data: parentage assignment, sibship clustering and beyond

(2017) Jisca Huisman   Molecular Ecology Resources

Recent natural selection causes adaptive evolution of an avian polygenic trait

(2017) Mirte Bosse et al.   SCIENCE

Genomic Quantitative Genetics to Study Evolution in the Wild

(2017) Phillip Gienapp et al.   TRENDS IN ECOLOGY & EVOLUTION

Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches

(2016) Pierre-Alexandre Gagnaire et al.   Current Zoology

Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits

(2016) M. Szulkin et al.   MOLECULAR ECOLOGY

Evolutionary signals of selection on cognition from the great tit genome and methylome

(2016) Veronika N. Laine et al.   Nature Communications

Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches

(2016) Pierre-Alexandre Gagnaire et al.   Current Zoology

Mediterranean blue tits as a case study of local adaptation

(2015) Anne Charmantier et al.   Evolutionary Applications

Genome-wide association and genome partitioning reveal novel genomic regions underlying variation in gastrointestinal nematode burden in a wild bird

(2015) Marius A. Wenzel et al.   MOLECULAR ECOLOGY

Heterogeneity of genetic architecture of body size traits in a free-living population

(2015) Camillo Bérénos et al.   MOLECULAR ECOLOGY

Replicated analysis of the genetic architecture of quantitative traits in two wild great tit populations

(2015) Anna W. Santure et al.   MOLECULAR ECOLOGY

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Challenges and prospects in genome-wide quantitative trait loci mapping of standing genetic variation in natural populations

(2014) Holger Schielzeth et al.   Annals of the New York Academy of Sciences

A General Unified Framework to Assess the Sampling Variance of Heritability Estimates Using Pedigree or Marker-Based Relationships

(2014) P. M. Visscher et al.   GENETICS

Estimating quantitative genetic parameters in wild populations: a comparison of pedigree and genomic approaches

(2014) Camillo Bérénos et al.   MOLECULAR ECOLOGY

Assessing Multivariate Constraints to Evolution across Ten Long-Term Avian Studies

(2014) Celine Teplitsky et al.   PLoS One

Statistical Power to Detect Genetic (Co)Variance of Complex Traits Using SNP Data in Unrelated Samples

(2014) Peter M. Visscher et al.   PLoS Genetics

Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population

(2013) Anna W. Santure et al.   MOLECULAR ECOLOGY

Next-generation QTL mapping: crowdsourcing SNPs, without pedigrees

(2013) Scott V. Edwards   MOLECULAR ECOLOGY

Partitioning of genetic variation across the genome using multimarker methods in a wild bird population

(2013) Matthew R. Robinson et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Estimating heritability using genomic data

(2013) John Stanton-Geddes et al.   Methods in Ecology and Evolution

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Habitat-Linked Population Genetic Differentiation in the Blue Tit Cyanistes caeruleus

(2012) Melody Porlier et al.   JOURNAL OF HEREDITY

Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits

(2012) Shashaank Vattikuti et al.   PLoS Genetics

Testing Mechanisms of Bergmann’s Rule: Phenotypic Decline but No Genetic Change in Body Size in Three Passerine Bird Populations

(2011) Arild Husby et al.   AMERICAN NATURALIST

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Genome partitioning of genetic variation for complex traits using common SNPs

(2011) Jian Yang et al.   NATURE GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

The Misuse of BLUP in Ecology and Evolution

(2009) Jarrod D. Hadfield et al.   AMERICAN NATURALIST

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

pedantics: an r package for pedigree-based genetic simulation and pedigree manipulation, characterization and viewing

(2009) MICHAEL B. MORRISSEY et al.   Molecular Ecology Resources

EVOLUTIONARY DYNAMICS OF A SEXUAL ORNAMENT IN THE HOUSE SPARROW (PASSER DOMESTICUS): THE ROLE OF INDIRECT SELECTION WITHIN AND BETWEEN SEXES

(2008) Henrik Jensen et al.   EVOLUTION

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Wild pedigrees: the way forward

(2008) J.M Pemberton   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES