Challenges and prospects in genome-wide quantitative trait loci mapping of standing genetic variation in natural populations

What Is the Significance of Difference in Phenotypic Variability across SNP Genotypes?

(2013) Xiangqing Sun et al.   AMERICAN JOURNAL OF HUMAN GENETICS

An extensive candidate gene approach to speciation: diversity, divergence and linkage disequilibrium in candidate pigmentation genes across the European crow hybrid zone

(2013) J W Poelstra et al.   HEREDITY

Admixture mapping of quantitative traits in Populus hybrid zones: power and limitations

(2013) D Lindtke et al.   HEREDITY

Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population

(2013) Anna W. Santure et al.   MOLECULAR ECOLOGY

Haplotype structure, adaptive history and associations with exploratory behaviour of theDRD4gene region in four great tit (Parus major) populations

(2013) Jakob C. Mueller et al.   MOLECULAR ECOLOGY

Partitioning of genetic variation across the genome using multimarker methods in a wild bird population

(2013) Matthew R. Robinson et al.   MOLECULAR ECOLOGY

Annotated genes and nonannotated genomes: cross-species use of Gene Ontology in ecology and evolution research

(2013) C. R. Primmer et al.   MOLECULAR ECOLOGY

A road map for molecular ecology

(2013) Rose L. Andrew et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Major QTLs for critical photoperiod and vernalization underlie extensive variation in flowering in theMimulus guttatusspecies complex

(2013) Jannice Friedman et al.   NEW PHYTOLOGIST

Quantitative Genetic Analysis of Retinal Degeneration in the Blind Cavefish Astyanax mexicanus

(2013) Kelly E. O'Quin et al.   PLoS One

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A quantitative trait locus analysis of personality in wild bighorn sheep

(2013) J. Poissant et al.   Ecology and Evolution

Recent developments in statistical methods for detecting genetic loci affecting phenotypic variability

(2012) Lars Rönnegård et al.   BMC GENETICS

Origin, fate, and architecture of ecologically relevant genetic variation

(2012) Robert I Colautti et al.   CURRENT OPINION IN PLANT BIOLOGY

LOST IN THE MAP

(2012) Michael Travisano et al.   EVOLUTION

Mapping Quantitative Trait Loci onto a Phylogenetic Tree

(2012) K. W. Broman et al.   GENETICS

Spatially and temporally varying selection on intrapopulation quantitative trait loci for a life history trade-off inMimulus guttatus

(2012) JULIUS P. MOJICA et al.   MOLECULAR ECOLOGY

Selection and microevolution of coat pattern are cryptic in a wild population of sheep

(2012) J. GRATTEN et al.   MOLECULAR ECOLOGY

QTL and quantitative genetic analysis of beak morphology reveals patterns of standing genetic variation in an Estrildid finch

(2012) ULRICH KNIEF et al.   MOLECULAR ECOLOGY

Admixture mapping of male nuptial colour and body shape in a recently formed hybrid population of threespine stickleback

(2012) TIFFANY B. MALEK et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Genetic trade-offs and conditional neutrality contribute to local adaptation

(2012) JILL T. ANDERSON et al.   MOLECULAR ECOLOGY

The design and cross-population application of a genome-wide SNP chip for the great tit Parus major

(2012) NIKKIE E. M. Van BERS et al.   Molecular Ecology Resources

FTO genotype is associated with phenotypic variability of body mass index

(2012) Jian Yang et al.   NATURE

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

Genome-wide association studies in mice

(2012) Jonathan Flint et al.   NATURE REVIEWS GENETICS

Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era

(2012) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Mapping of Ionomic Traits in Mimulus guttatus Reveals Mo and Cd QTLs That Colocalize with MOT1 Homologues

(2012) David B. Lowry et al.   PLoS One

A rare major plant QTL determines non-responsiveness to a gall-forming insect in willow

(2012) Solveig Höglund et al.   Tree Genetics & Genomes

What is needed for next-generation ecological and evolutionary genomics?

(2012) Scott A. Pavey et al.   TRENDS IN ECOLOGY & EVOLUTION

Chapter 11: Genome-Wide Association Studies

(2012) William S. Bush et al.   PLoS Computational Biology

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

QTL LINKAGE MAPPING OF ZEBRA FINCH BEAK COLOR SHOWS AN OLIGOGENIC CONTROL OF A SEXUALLY SELECTED TRAIT

(2011) Holger Schielzeth et al.   EVOLUTION

QTL mapping for sexually dimorphic fitness-related traits in wild bighorn sheep

(2011) J Poissant et al.   HEREDITY

QTL linkage mapping of wing length in zebra finch using genome-wide single nucleotide polymorphisms markers

(2011) HOLGER SCHIELZETH et al.   MOLECULAR ECOLOGY

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

(2011) SUSAN E. JOHNSTON et al.   MOLECULAR ECOLOGY

Genome partitioning of genetic variation for complex traits using common SNPs

(2011) Jian Yang et al.   NATURE GENETICS

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus

(2011) M. E. Protas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Candidate genes for carotenoid coloration in vertebrates and their expression profiles in the carotenoid-containing plumage and bill of a wild bird

(2011) N. Walsh et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Cryptic multiple hypotheses testing in linear models: overestimated effect sizes and the winner's curse

(2010) Wolfgang Forstmeier et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Variance heterogeneity analysis for detection of potentially interacting genetic loci: method and its limitations

(2010) Maksim V Struchalin et al.   BMC GENETICS

Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon

(2010) Anti Vasemägi et al.   BMC GENOMICS

LIFE-HISTORY QTLS AND NATURAL SELECTION ON FLOWERING TIME IN BOECHERA STRICTA, A PERENNIAL RELATIVE OF ARABIDOPSIS

(2010) JILL T. ANDERSON et al.   EVOLUTION

INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI

(2010) Jay F. Storz et al.   EVOLUTION

Multi-trait evolution in a cave fish, Astyanax mexicanus

(2010) Meredith Protas et al.   EVOLUTION & DEVELOPMENT

Is local adaptation in Mimulus guttatus caused by trade-offs at individual loci?

(2010) M. C. HALL et al.   MOLECULAR ECOLOGY

Association between DRD4 gene polymorphism and personality variation in great tits: a test across four wild populations

(2010) PETER KORSTEN et al.   MOLECULAR ECOLOGY

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Hundreds of variants clustered in genomic loci and biological pathways affect human height

(2010) Hana Lango Allen et al.   NATURE

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

(2010) Joy Bergelson et al.   NATURE REVIEWS GENETICS

New approaches to population stratification in genome-wide association studies

(2010) Alkes L. Price et al.   NATURE REVIEWS GENETICS

Widespread genomic divergence during sympatric speciation

(2010) A. P. Michel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A strong quantitative trait locus for wing length on chromosome 2 in a wild population of great reed warblers

(2010) M. Tarka et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Candidate genes versus genome-wide associations: which are better for detecting genetic susceptibility to infectious disease?

(2010) W. Amos et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population Structure and Cryptic Relatedness in Genetic Association Studies

(2010) William Astle et al.   STATISTICAL SCIENCE

Individuals and populations: the role of long-term, individual-based studies of animals in ecology and evolutionary biology

(2010) Tim Clutton-Brock et al.   TRENDS IN ECOLOGY & EVOLUTION

A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations

(2010) Nicola J. Nadeau et al.   TRENDS IN GENETICS

Genome mapping in intensively studied wild vertebrate populations

(2010) Jon Slate et al.   TRENDS IN GENETICS

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

(2010) David B. Lowry et al.   PLOS BIOLOGY

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

Regressive Evolution inAstyanaxCavefish

(2009) William R. Jeffery   Annual Review of Genetics

Rank-Based Inverse Normal Transformations are Increasingly Used, But are They Merited?

(2009) T. Mark Beasley et al.   BEHAVIOR GENETICS

ENVIRONMENT SPECIFIC PLEIOTROPY FACILITATES DIVERGENCE AT THEECTODYSPLASINLOCUS IN THREESPINE STICKLEBACK

(2009) Rowan D. H. Barrett et al.   EVOLUTION

Genetic architecture of quantitative traits in mice, flies, and humans

(2009) J. Flint et al.   GENOME RESEARCH

Ecological genomics of Boechera stricta: identification of a QTL controlling the allocation of methionine- vs branched-chain amino acid-derived glucosinolates and levels of insect herbivory

(2009) M E Schranz et al.   HEREDITY

Horn type and horn length genes map to the same chromosomal region in Soay sheep

(2009) S E Johnston et al.   HEREDITY

Extensive linkage disequilibrium in a wild bird population

(2009) M H Li et al.   HEREDITY

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Validating, augmenting and refining genome-wide association signals

(2009) John P. A. Ioannidis et al.   NATURE REVIEWS GENETICS

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Genetic and physiological basis of adaptive salt tolerance divergence between coastal and inlandMimulus guttatus

(2009) David B. Lowry et al.   NEW PHYTOLOGIST

Understanding and using quantitative genetic variation

(2009) W. G. Hill   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of Genome Size and Complexity in Pinus

(2009) Alison M. Morse et al.   PLoS One

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

(2009) L. A. Hindorff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genetic Architecture of Maize Flowering Time

(2009) E. S. Buckler et al.   SCIENCE

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

A Novel Role for Mc1r in the Parallel Evolution of Depigmentation in Independent Populations of the Cavefish Astyanax mexicanus

(2009) Joshua B. Gross et al.   PLoS Genetics

A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana

(2009) Paula X. Kover et al.   PLoS Genetics

Challenges for effective marker-assisted selection in plants

(2008) Frédéric Hospital   GENETICA

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA

Few Mendelian Genes Underlie the Quantitative Response of a Forest Tree, Eucalyptus globulus , to a Natural Fungal Epidemic

(2008) Jules S. Freeman et al.   GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Comparative genomics and the study of evolution by natural selection

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

Personal genomes: The case of the missing heritability

(2008) Brendan Maher   NATURE

Progress and challenges in genome-wide association studies in humans

(2008) Peter Donnelly   NATURE

Genetic basis of fitness differences in natural populations

(2008) Hans Ellegren et al.   NATURE

Sizing up human height variation

(2008) Peter M Visscher   NATURE GENETICS

Genome-wide association analysis identifies 20 loci that influence adult height

(2008) Michael N Weedon et al.   NATURE GENETICS

Many sequence variants affecting diversity of adult human height

(2008) Daniel F Gudbjartsson et al.   NATURE GENETICS

Identification of ten loci associated with height highlights new biological pathways in human growth

(2008) Guillaume Lettre et al.   NATURE GENETICS

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

(2008) Mark I. McCarthy et al.   NATURE REVIEWS GENETICS

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

(2008) Montgomery Slatkin   NATURE REVIEWS GENETICS

Natural Selection on a Major Armor Gene in Threespine Stickleback

(2008) R. D. H. Barrett et al.   SCIENCE

A Localized Negative Genetic Correlation Constrains Microevolution of Coat Color in Wild Sheep

(2008) J. Gratten et al.   SCIENCE

Admixture as the basis for genetic mapping

(2008) C. Alex Buerkle et al.   TRENDS IN ECOLOGY & EVOLUTION

Marker-assisted selection: an approach for precision plant breeding in the twenty-first century

(2007) B. C.Y Collard et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION