Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits

Mediterranean blue tits as a case study of local adaptation

(2015) Anne Charmantier et al.   Evolutionary Applications

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

Application of High Resolution Satellite Imagery to Characterize Individual-Based Environmental Heterogeneity in a Wild Blue Tit Population

(2015) Marta Szulkin et al.   Remote Sensing

The role of immigration and local adaptation on fine-scale genotypic and phenotypic population divergence in a less mobile passerine

(2014) V. García-Navas et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Rare Variation Facilitates Inferences of Fine-Scale Population Structure in Humans

(2014) Timothy D. O’Connor et al.   MOLECULAR BIOLOGY AND EVOLUTION

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Comparative population genomics in animals uncovers the determinants of genetic diversity

(2014) J. Romiguier et al.   NATURE

Pronounced Fixation, Strong Population Differentiation and Complex Population History in the Canary Islands Blue Tit Subspecies Complex

(2014) Bengt Hansson et al.   PLoS One

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

FINE-SCALE GENETIC STRUCTURE IN A WILD BIRD POPULATION: THE ROLE OF LIMITED DISPERSAL AND ENVIRONMENTALLY BASED SELECTION AS CAUSAL FACTORS

(2013) Colin J. Garroway et al.   EVOLUTION

Extremely reduced dispersal and gene flow in an island bird

(2013) J A M Bertrand et al.   HEREDITY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

The Relationship Between FST and the Frequency of the Most Frequent Allele

(2012) M. Jakobsson et al.   GENETICS

Variation in phenotypic plasticity and selection patterns in blue tit breeding time: between- and within-population comparisons

(2012) Melody Porlier et al.   JOURNAL OF ANIMAL ECOLOGY

Population differentiation and restricted gene flow in Spanish crossbills: not isolation-by-distance but isolation-by-ecology

(2012) P. EDELAAR et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Habitat-Linked Population Genetic Differentiation in the Blue Tit Cyanistes caeruleus

(2012) Melody Porlier et al.   JOURNAL OF HEREDITY

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

The design and cross-population application of a genome-wide SNP chip for the great tit Parus major

(2012) NIKKIE E. M. Van BERS et al.   Molecular Ecology Resources

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

(2012) V. CAHAIS et al.   Molecular Ecology Resources

Two Different High Throughput Sequencing Approaches Identify Thousands of De Novo Genomic Markers for the Genetically Depleted Bornean Elephant

(2012) Reeta Sharma et al.   PLoS One

Non-random gene flow: an underappreciated force in evolution and ecology

(2012) Pim Edelaar et al.   TRENDS IN ECOLOGY & EVOLUTION

Inbreeding avoidance, tolerance, or preference in animals?

(2012) Marta Szulkin et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic structure reflects natal dispersal movements at different spatial scales in the blue tit, Cyanistes caeruleus

(2011) Joaquín Ortego et al.   ANIMAL BEHAVIOUR

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

(2011) Anna W Santure et al.   BMC GENOMICS

Comparisons between QST and FST-how wrong have we been?

(2011) PIM EDELAAR et al.   MOLECULAR ECOLOGY

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Live Where You Thrive: Joint Evolution of Habitat Choice and Local Adaptation Facilitates Specialization and Promotes Diversity

(2009) Virginie Ravigné et al.   AMERICAN NATURALIST

Neutral markers mirror small-scale quantitative genetic differentiation in an avian island population

(2009) ERIK POSTMA et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

MATCHING HABITAT CHOICE CAUSES DIRECTED GENE FLOW: A NEGLECTED DIMENSION IN EVOLUTION AND ECOLOGY

(2008) Pim Edelaar et al.   EVOLUTION

Revealing cryptic spatial patterns in genetic variability by a new multivariate method

(2008) T Jombart et al.   HEREDITY

THE HABITATS OF EURASIAN TITS (PARUS SPP.)

(2008) D. W. Snow   IBIS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One