Identification of chromatin-accessible domains in non-alcoholic steatohepatitis-derived hepatocellular carcinoma

Role of hepatic Annexin A6 in fatty acid-induced lipid droplet formation

(2017) Rose Cairns et al.   EXPERIMENTAL CELL RESEARCH

Human leucine zipper protein promotes hepatic steatosis via induction of apolipoprotein A-IV

(2017) Minsoo Kang et al.   FASEB JOURNAL

Incidence of Hepatocellular Carcinoma in All 50 United States, From 2000 Through 2012

(2017) Donna L. White et al.   GASTROENTEROLOGY

Integrative Analysis of Microarray Data to Reveal Regulation Patterns in the Pathogenesis of Hepatocellular Carcinoma

(2017) Juan Chen et al.   Gut and Liver

Inhibition of the Cell Death Pathway in Nonalcoholic Steatohepatitis (NASH)-Related Hepatocarcinogenesis Is Associated with Histone H4 lysine 16 Deacetylation

(2017) Aline de Conti et al.   MOLECULAR CANCER RESEARCH

IGFBP-1 and IGF-I as markers for advanced fibrosis in NAFLD – a pilot study

(2017) Hannes Hagström et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Methylation of an intragenic alternative promoter regulates transcription of GARP

(2016) Sonja Haupt et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility

(2016) Sarah K. Denny et al.   CELL

GSK-3  Governs Inflammation-Induced NFATc2 Signaling Hubs to Promote Pancreatic Cancer Progression

(2016) S. Baumgart et al.   MOLECULAR CANCER THERAPEUTICS

The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation

(2016) Makiko Iwafuchi-Doi et al.   MOLECULAR CELL

The landscape of accessible chromatin in mammalian preimplantation embryos

(2016) Jingyi Wu et al.   NATURE

A long non-coding RNA,APOA4-AS, regulatesAPOA4expression depending on HuR in mice

(2016) Wangshu Qin et al.   NUCLEIC ACIDS RESEARCH

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Chromatin accessibility maps of chronic lymphocytic leukaemia identify subtype-specific epigenome signatures and transcription regulatory networks

(2016) André F. Rendeiro et al.   Nature Communications

Cell freezing protocol suitable for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells

(2016) Pamela Milani et al.   Scientific Reports

Association of nonalcoholic fatty liver disease (NAFLD) with hepatocellular carcinoma (HCC) in the United States from 2004 to 2009

(2015) Zobair M. Younossi et al.   HEPATOLOGY

Epidemiology and Natural History of Nonalcoholic Fatty Liver Disease

(2015) Sanjaya Satapathy et al.   SEMINARS IN LIVER DISEASE

Up-regulation of annexin A2 expression predicates advanced clinicopathological features and poor prognosis in hepatocellular carcinoma

(2015) Haijian Zhang et al.   TUMOR BIOLOGY

Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling

(2015) Kristofer Davie et al.   PLoS Genetics

Intracellular role of exchangeable apolipoproteins in energy homeostasis, obesity and non-alcoholic fatty liver disease

(2014) Chen-Lu Wu et al.   BIOLOGICAL REVIEWS

Open Chromatin Profiling in Mice Livers Reveals Unique Chromatin Variations Induced by High Fat Diet

(2014) Amy Leung et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Overexpression of syntenin enhances hepatoma cell proliferation and invasion: Potential roles in human hepatoma

(2014) XUEMIN LIU et al.   ONCOLOGY REPORTS

Concurrent Activation of Acetylation and Tri-Methylation of H3K27 in a Subset of Hepatocellular Carcinoma with Aggressive Behavior

(2014) Akimasa Hayashi et al.   PLoS One

Proteomic and genomic studies of non-alcoholic fatty liver disease - clues in the pathogenesis

(2014) Jun Wei Lim   WORLD JOURNAL OF GASTROENTEROLOGY

Inflammation-Induced NFATc1-STAT3 Transcription Complex Promotes Pancreatic Cancer Initiation by KrasG12D

(2014) S. Baumgart et al.   Cancer Discovery

Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes

(2013) Andrew B. Stergachis et al.   CELL

A murine model for non-alcoholic steatohepatitis showing evidence of association between diabetes and hepatocellular carcinoma

(2013) Masato Fujii et al.   Medical Molecular Morphology

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Role of epigenetic aberrations in the development and progression of human hepatocellular carcinoma

(2012) Igor P. Pogribny et al.   CANCER LETTERS

Annexin A2 is a discriminative serological candidate in early hepatocellular carcinoma

(2012) Yulin Sun et al.   CARCINOGENESIS

Mechanisms by which transcription factors gain access to target sequence elements in chromatin

(2012) Michael J Guertin et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Calcineurin/NFATc1 Pathway Contributes to Cell Proliferation in Hepatocellular Carcinoma

(2012) Shuhuai Wang et al.   DIGESTIVE DISEASES AND SCIENCES

Sequence and chromatin determinants of cell-type-specific transcription factor binding

(2012) A. Arvey et al.   GENOME RESEARCH

A map of the cis-regulatory sequences in the mouse genome

(2012) Yin Shen et al.   NATURE

The accessible chromatin landscape of the human genome

(2012) Robert E. Thurman et al.   NATURE

Expression characteristics and diagnostic value of annexin A2 in hepatocellular carcinoma

(2012) Hai-Jian Zhang   WORLD JOURNAL OF GASTROENTEROLOGY

Genetic modifiers of non-alcoholic fatty liver disease progression

(2011) Quentin M. Anstee et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

International Trends in Liver Cancer Incidence Rates

(2011) M. M. Center et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Mapping and analysis of chromatin state dynamics in nine human cell types

(2011) Jason Ernst et al.   NATURE

DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing

(2011) Fabienne Brenet et al.   PLoS One

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data

(2010) Robert C McLeay et al.   BMC BIOINFORMATICS

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

Annexin A2 as a differential diagnostic marker of hepatocellular tumors

(2010) Thomas Longerich et al.   PATHOLOGY RESEARCH AND PRACTICE

Parkin as a tumor suppressor gene for hepatocellular carcinoma

(2008) M Fujiwara et al.   ONCOGENE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY

Plasma Plasminogen Activator Inhibitor-1 Levels and Nonalcoholic Fatty Liver in Individuals With Features of Metabolic Syndrome

(2007) Gabriela de Larrañaga et al.   CLINICAL AND APPLIED THROMBOSIS-HEMOSTASIS