Chromatin accessibility maps of chronic lymphocytic leukaemia identify subtype-specific epigenome signatures and transcription regulatory networks
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Title
Chromatin accessibility maps of chronic lymphocytic leukaemia identify subtype-specific epigenome signatures and transcription regulatory networks
Authors
Keywords
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Journal
Nature Communications
Volume 7, Issue -, Pages 11938
Publisher
Springer Nature
Online
2016-06-27
DOI
10.1038/ncomms11938
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Note: Only part of the references are listed.- Genome-wide footprinting: ready for prime time?
- (2016) Myong-Hee Sung et al. NATURE METHODS
- Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data: Fig. 1.
- (2015) Bin Wang et al. BIOINFORMATICS
- Sambamba: fast processing of NGS alignment formats
- (2015) Artem Tarasov et al. BIOINFORMATICS
- LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
- (2015) Nathan C. Sheffield et al. BIOINFORMATICS
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- (2015) Sally Yepes et al. BMC GENOMICS
- Surrogate molecular markers for IGHV mutational status in chronic lymphocytic leukemia for predicting time to first treatment
- (2015) Fortunato Morabito et al. LEUKEMIA RESEARCH
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Single-cell chromatin accessibility reveals principles of regulatory variation
- (2015) Jason D. Buenrostro et al. NATURE
- Non-coding recurrent mutations in chronic lymphocytic leukaemia
- (2015) Xose S. Puente et al. NATURE
- Mutations driving CLL and their evolution in progression and relapse
- (2015) Dan A. Landau et al. NATURE
- Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues
- (2015) Jason Ernst et al. NATURE BIOTECHNOLOGY
- Toward understanding and exploiting tumor heterogeneity
- (2015) Ash A Alizadeh et al. NATURE MEDICINE
- ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors
- (2015) Christian Schmidl et al. NATURE METHODS
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Unraveling the 3D genome: genomics tools for multiscale exploration
- (2015) Viviana I. Risca et al. TRENDS IN GENETICS
- Higher gene expression variability in the more aggressive subtype of chronic lymphocytic leukemia
- (2015) Simone Ecker et al. Genome Medicine
- Individuality and Variation of Personal Regulomes in Primary Human T Cells
- (2015) Kun Qu et al. Cell Systems
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Gene mutations and treatment outcome in chronic lymphocytic leukemia: results from the CLL8 trial
- (2014) S. Stilgenbauer et al. BLOOD
- Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
- (2014) Hongshan Jiang et al. BMC BIOINFORMATICS
- Locally Disordered Methylation Forms the Basis of Intratumor Methylome Variation in Chronic Lymphocytic Leukemia
- (2014) Dan A. Landau et al. CANCER CELL
- A B-cell epigenetic signature defines three biologic subgroups of chronic lymphocytic leukemia with clinical impact
- (2014) A C Queirós et al. LEUKEMIA
- Recurrent mutations refine prognosis in chronic lymphocytic leukemia
- (2014) P Baliakas et al. LEUKEMIA
- Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
- (2014) Richard I Sherwood et al. NATURE BIOTECHNOLOGY
- CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities
- (2014) Manuel Sánchez-Castillo et al. NUCLEIC ACIDS RESEARCH
- The UCSC Genome Browser database: 2015 update
- (2014) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
- (2013) P. G. Ferreira et al. GENOME RESEARCH
- Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions
- (2013) N. C. Sheffield et al. GENOME RESEARCH
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- (2013) Michael S. Lawrence et al. NATURE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Role of CTLA4 in the Proliferation and Survival of Chronic Lymphocytic Leukemia
- (2013) Amit K. Mittal et al. PLoS One
- Evolution of DNA Methylation Is Linked to Genetic Aberrations in Chronic Lymphocytic Leukemia
- (2013) C. C. Oakes et al. Cancer Discovery
- Identifying differentially expressed transcripts from RNA-seq data with biological variation
- (2012) Peter Glaus et al. BIOINFORMATICS
- Stereotyped B-cell receptors in one-third of chronic lymphocytic leukemia: a molecular classification with implications for targeted therapies
- (2012) A. Agathangelidis et al. BLOOD
- Integrated mutational and cytogenetic analysis identifies new prognostic subgroups in chronic lymphocytic leukemia
- (2012) D. Rossi et al. BLOOD
- The clinical significance of NOTCH1 and SF3B1 mutations in the UK LRF CLL4 trial
- (2012) D. G. Oscier et al. BLOOD
- BLUEPRINT to decode the epigenetic signature written in blood
- (2012) David Adams et al. NATURE BIOTECHNOLOGY
- Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia
- (2012) Marta Kulis et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Integrative annotation of chromatin elements from ENCODE data
- (2012) Michael M. Hoffman et al. NUCLEIC ACIDS RESEARCH
- CD38 and chronic lymphocytic leukemia: a decade later
- (2011) F. Malavasi et al. BLOOD
- Aberrant interferon-signaling is associated with aggressive chronic lymphocytic leukemia
- (2011) J. Tomic et al. BLOOD
- B-cell receptor signaling in chronic lymphocytic leukemia
- (2011) F. K. Stevenson et al. BLOOD
- Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
- (2011) Christoph Bock et al. CELL
- Cistrome: an integrative platform for transcriptional regulation studies
- (2011) Tao Liu et al. GENOME BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
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- (2010) Celine Lefebvre et al. Molecular Systems Biology
- The normal IGHV1-69-derived B-cell repertoire contains stereotypic patterns characteristic of unmutated CLL
- (2009) F. Forconi et al. BLOOD
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- (2008) Yong Zhang et al. GENOME BIOLOGY
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