Rapid Microbial Community Changes During Initial Stages of Pine Litter Decomposition

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Tideless estuaries in brackish seas as possible freshwater-marine transition zones for bacteria: the case study of the Vistula river estuary

(2017) Marcin Gołębiewski et al.   Environmental Microbiology Reports

Fungi associated with decomposing deadwood in a natural beech-dominated forest

(2016) Petr Baldrian et al.   Fungal Ecology

Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition

(2016) Witoon Purahong et al.   MOLECULAR ECOLOGY

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(2016) M. S. Wiseman et al.   PLANT DISEASE

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in fungal community of Scots pine ( Pinus sylvestris ) needles along a latitudinal gradient in Sweden

(2015) Hanna Millberg et al.   Fungal Ecology

Understanding the dominant controls on litter decomposition

(2015) Mark A. Bradford et al.   JOURNAL OF ECOLOGY

Trapping of phosphate solubilizing bacteria on hyphae of the arbuscular mycorrhizal fungus Rhizophagus irregularis DAOM 197198

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STAMP: statistical analysis of taxonomic and functional profiles

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(2014) Marcin Gołębiewski et al.   MICROBIAL ECOLOGY

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

(2014) Kenan Hadziavdic et al.   PLoS One

The role of litter-feeding macroarthropods in decomposition processes: A reappraisal of common views

(2014) J.F. David   SOIL BIOLOGY & BIOCHEMISTRY

Pinus flexilis and Piceae engelmannii share a simple and consistent needle endophyte microbiota with a potential role in nitrogen fixation

(2014) Alyssa A. Carrell et al.   Frontiers in Microbiology

Phacidium and Ceuthospora (Phacidiaceae) are congeneric: taxonomic and nomenclatural implications

(2014) Pedro W. Crous et al.   IMA Fungus

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

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Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

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Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels

(2012) Brant C. Faircloth et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

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Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Anaerobic Eury- and Crenarchaeota inhabit ectomycorrhizas of boreal forest Scots pine

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Colonization and lignin decomposition of pine needle litter by Lophodermium pinastri

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Decomposing capacity of fungi commonly detected in Pinus sylvestris needle litter

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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

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