Pinus flexilis and Piceae engelmannii share a simple and consistent needle endophyte microbiota with a potential role in nitrogen fixation

nifHpyrosequencing reveals the potential for location-specific soil chemistry to influence N2-fixing community dynamics

(2014) Mónica M. Collavino et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial endophytes enhance competition by invasive plants

(2013) Marnie E. Rout et al.   AMERICAN JOURNAL OF BOTANY

Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea

(2013) Hanna Farnelid et al.   ISME Journal

Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities

(2013) Alissa S. Hanshew et al.   JOURNAL OF MICROBIOLOGICAL METHODS

N2-Fixation and Seedling Growth Promotion of Lodgepole Pine by Endophytic Paenibacillus polymyxa

(2013) Richa Anand et al.   MICROBIAL ECOLOGY

Biological nitrogen fixation and biomass accumulation within poplar clones as a result of inoculations with diazotrophic endophyte consortia

(2013) Jenny L. Knoth et al.   NEW PHYTOLOGIST

Biological nitrogen fixation: rates, patterns and ecological controls in terrestrial ecosystems

(2013) P. M. Vitousek et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

(2013) K. Schlaeppi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

N2-fixation and growth promotion in cedar colonized by an endophytic strain of Paenibacillus polymyxa

(2012) Richa Anand et al.   BIOLOGY AND FERTILITY OF SOILS

Evidence of nitrogen fixation in lodgepole pine inoculated with diazotrophic Paenibacillus polymyxa

(2012) Amandeep Bal et al.   Botany

Isolation and identification of diazotrophic bacteria from internal tissues of Pinus contorta and Thuja plicata

(2012) Amandeep Bal et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis

(2012) Dagmar Woebken et al.   ISME Journal

Evidence that Northern Pioneering Pines with Tuberculate Mycorrhizae are Unaffected by Varying Soil Nitrogen Levels

(2012) William Kenneth Chapman et al.   MICROBIAL ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

‘Ecosystomics’: ecology by sequencer

(2012) Anthony M. Poole et al.   TRENDS IN ECOLOGY & EVOLUTION

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

Culturing and direct PCR suggest prevalent host generalism among diverse fungal endophytes of tropical forest grasses

(2011) K. Lindsay Higgins et al.   MYCOLOGIA

Increased forest ecosystem carbon and nitrogen storage from nitrogen rich bedrock

(2011) Scott L. Morford et al.   NATURE

Acetic Acid Bacteria, Newly Emerging Symbionts of Insects

(2010) E. Crotti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative Chloroplast Genomics Reveals the Evolution of Pinaceae Genera and Subfamilies

(2010) Ching-Ping Lin et al.   Genome Biology and Evolution

A simple and distinctive microbiota associated with honey bees and bumble bees

(2010) VINCENT G. MARTINSON et al.   MOLECULAR ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Microbial community shifts influence patterns in tropical forest nitrogen fixation

(2010) Sasha C. Reed et al.   OECOLOGIA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Ameyamaea chiangmaiensisgen. nov., sp. nov., an Acetic Acid Bacterium in the α-Proteobacteria

(2009) Pattaraporn YUKPHAN et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Uptake of organic nitrogen by plants

(2009) Torgny Näsholm et al.   NEW PHYTOLOGIST

Phylogenetic Characterization of Two Novel Commensal Bacteria Involved with Innate Immune Homeostasis in Drosophila melanogaster

(2008) S. W. Roh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tanticharoenia sakaeratensisgen. nov., sp. nov., a New Osmotolerant Acetic Acid Bacterium in the α-Proteobacteria

(2008) Pattaraporn YUKPHAN et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Diversity of predominant endophytic bacteria in European deciduous and coniferous trees

(2008) Hironari Izumi et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Endophytic Actinobacteria Induce Defense Pathways inArabidopsis thaliana

(2008) V. M. Conn et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY