Chemical genomic guided engineering of gamma-valerolactone tolerant yeast

Functional annotation of chemical libraries across diverse biological processes

(2017) Jeff S Piotrowski et al.   Nature Chemical Biology

Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain

(2016) Quinn Dickinson et al.   Microbial Cell Factories

A global genetic interaction network maps a wiring diagram of cellular function

(2016) M. Costanzo et al.   SCIENCE

Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae

(2016) Trey K. Sato et al.   PLoS Genetics

Isofunctional Enzymes PAD1 and UbiX Catalyze Formation of a Novel Cofactor Required by Ferulic Acid Decarboxylase and 4-Hydroxy-3-polyprenylbenzoic Acid Decarboxylase

(2015) Fengming Lin et al.   ACS Chemical Biology

Structure and Mechanism of Ferulic Acid Decarboxylase (FDC1) from Saccharomyces cerevisiae

(2015) Mohammad Wadud Bhuiya et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Modeling Microbial Growth Curves with GCAT

(2015) Yury V. Bukhman et al.   BioEnergy Research

Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation

(2015) Jose Serate et al.   Biotechnology for Biofuels

UbiX is a flavin prenyltransferase required for bacterial ubiquinone biosynthesis

(2015) Mark D. White et al.   NATURE

New cofactor supports α,β-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition

(2015) Karl A. P. Payne et al.   NATURE

Overexpression of PAD1 and FDC1 results in significant cinnamic acid decarboxylase activity in Saccharomyces cerevisiae

(2015) Peter Richard et al.   AMB Express

A Single-Step Method for Rapid Extraction of Total Lipids from Green Microalgae

(2014) Martin Axelsson et al.   PLoS One

Engineering and Two-Stage Evolution of a Lignocellulosic Hydrolysate-Tolerant Saccharomyces cerevisiae Strain for Anaerobic Fermentation of Xylose from AFEX Pretreated Corn Stover

(2014) Lucas S. Parreiras et al.   PLoS One

Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose

(2014) A. M. Socha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nonenzymatic Sugar Production from Biomass Using Biomass-Derived  -Valerolactone

(2014) J. S. Luterbacher et al.   SCIENCE

Death by a thousand cuts: the challenges and diverse landscape of lignocellulosic hydrolysate inhibitors

(2014) Jeff S. Piotrowski et al.   Frontiers in Microbiology

Comparison of Sterol Import under Aerobic and Anaerobic Conditions in Three Fungal Species, Candida albicans, Candida glabrata, and Saccharomyces cerevisiae

(2013) Martin Zavrel et al.   EUKARYOTIC CELL

Genomewide screening for genes involved in biofilm formation and miconazole susceptibility inSaccharomyces cerevisiae

(2013) Davy Vandenbosch et al.   FEMS YEAST RESEARCH

High-resolution chemical dissection of a model eukaryote reveals targets, pathways and gene functions

(2013) Dominic Hoepfner et al.   MICROBIOLOGICAL RESEARCH

Role of Unsaturated Lipid and Ergosterol in Ethanol Tolerance of Model Yeast Biomembranes

(2012) Juan M. Vanegas et al.   BIOPHYSICAL JOURNAL

Chemical-genomic profiling: Systematic analysis of the cellular targets of bioactive molecules

(2011) Kerry Andrusiak et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications

(2011) José Otero et al.   BMC GENOMICS

Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production

(2011) Mario Ouellet et al.   GREEN CHEMISTRY

Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell

(2011) Leslie Magtanong et al.   NATURE BIOTECHNOLOGY

Genome-wide identification of genes involved in tolerance to various environmental stresses inSaccharomyces cerevisiae

(2010) C. Auesukaree et al.   JOURNAL OF APPLIED GENETICS

The Rpd3L HDAC complex is essential for the heat stress response in yeast

(2010) Clàudia Ruiz-Roig et al.   MOLECULAR MICROBIOLOGY

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

PAD1 and FDC1 are essential for the decarboxylation of phenylacrylic acids in Saccharomyces cerevisiae

(2009) Nobuhiko Mukai et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds

(2009) Cheuk Hei Ho et al.   NATURE BIOTECHNOLOGY

Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress inSaccharomyces cerevisiae

(2008) Katsunori Yoshikawa et al.   FEMS YEAST RESEARCH

Sequential Elimination of Major-Effect Contributors Identifies Additional Quantitative Trait Loci Conditioning High-Temperature Growth in Yeast

(2008) Himanshu Sinha et al.   GENETICS