Nutrient dynamics and stream order influence microbial community patterns along a 2914 kilometer transect of the Mississippi River

Patterns of variation in diversity of the Mississippi river microbiome over 1,300 kilometers

(2017) Jason T. Payne et al.   PLoS One

When riverine dissolved organic matter (DOM) meets labile DOM in coastal waters: changes in bacterial community activity and composition

(2016) Marine Blanchet et al.   AQUATIC SCIENCES

Anthropogenic effects on bacterial diversity and function along a river-to-estuary gradient in Northwest Greece revealed by metagenomics

(2016) Alexandra Meziti et al.   ENVIRONMENTAL MICROBIOLOGY

Interactions between hydrology and water chemistry shape bacterioplankton biogeography across boreal freshwater networks

(2016) Juan Pablo Niño-García et al.   ISME Journal

Sediments and Soils Act as Reservoirs for Taxonomic and Functional Bacterial Diversity in the Upper Mississippi River

(2016) Christopher Staley et al.   MICROBIAL ECOLOGY

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

The Ecology of Acidobacteria: Moving beyond Genes and Genomes

(2016) Anna M. Kielak et al.   Frontiers in Microbiology

Bacterial diversity along a 2600 km river continuum

(2015) Domenico Savio et al.   ENVIRONMENTAL MICROBIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Biogeochemical and metagenomic analysis of nitrite accumulation in the Gulf of Mexico hypoxic zone

(2015) Laura A. Bristow et al.   LIMNOLOGY AND OCEANOGRAPHY

Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River

(2015) Christopher Staley et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water

(2015) Asja Korajkic et al.   WATER RESEARCH

Limited dissemination of the wastewater treatment plant core resistome

(2015) Christian Munck et al.   Nature Communications

Hydrologic linkages drive spatial structuring of bacterial assemblages and functioning in alpine floodplains

(2015) Remo Freimann et al.   Frontiers in Microbiology

Weak Coherence in Abundance Patterns Between Bacterial Classes and Their Constituent OTUs Along a Regulated River

(2015) Clara Ruiz-González et al.   Frontiers in Microbiology

Year-Long Metagenomic Study of River Microbiomes Across Land Use and Water Quality

(2015) Thea Van Rossum et al.   Frontiers in Microbiology

Stream microbial diversity in response to environmental changes: review and synthesis of existing research

(2015) Lydia H. Zeglin   Frontiers in Microbiology

Free-Living and Particle-Associated Bacterioplankton in Large Rivers of the Mississippi River Basin Demonstrate Biogeographic Patterns

(2014) Colin R. Jackson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Spatial biodiversity of bacteria along the largest Arctic river determined by next-generation sequencing

(2014) Olesya V. Kolmakova et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of preservation method on the assessment of bacterial community structure in soil and water samples

(2014) Valeria Tatangelo et al.   FEMS MICROBIOLOGY LETTERS

Catchment-scale biogeography of riverine bacterioplankton

(2014) Daniel S Read et al.   ISME Journal

Composition and enzymatic function of particle-associated and free-living bacteria: a coastal/offshore comparison

(2014) Lindsay D'Ambrosio et al.   ISME Journal

High frequency measurement of nitrate concentration in the Lower Mississippi River, USA

(2014) Shuiwang Duan et al.   JOURNAL OF HYDROLOGY

Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover

(2014) Christopher Staley et al.   Frontiers in Microbiology

Bacterial community structure is indicative of chemical inputs in the Upper Mississippi River

(2014) Christopher Staley et al.   Frontiers in Microbiology

Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin

(2013) Caroline S Fortunato et al.   ISME Journal

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River

(2013) C. Staley et al.   JOURNAL OF APPLIED MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Headwaters are critical reservoirs of microbial diversity for fluvial networks

(2013) K. Besemer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of large river dam regulation on bacterioplankton community structure

(2012) Clara Ruiz-González et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

(2012) Byron C Crump et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Novosphingobium sediminis sp. nov., isolated from the sediment of a eutrophic lake

(2012) Hai-Feng Li et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

(2011) Rohit Ghai et al.   PLoS One

2,4-Diacetylphloroglucinol suppresses zoosporogenesis and impairs motility of Peronosporomycete zoospores

(2011) M. Tofazzal Islam et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Quantifying the effect of land use land cover change on increasing discharge in the Upper Mississippi River

(2010) Keith E. Schilling et al.   JOURNAL OF HYDROLOGY

Low dissolved inorganic nitrogen and increased heterocyte frequency: precursors to Anabaena planktonica blooms in a temperate, eutrophic reservoir

(2010) S. A. Wood et al.   JOURNAL OF PLANKTON RESEARCH

Global threats to human water security and river biodiversity

(2010) C. J. Vörösmarty et al.   NATURE

Seasonal Changes in Bacterial and Archaeal Gene Expression Patterns across Salinity Gradients in the Columbia River Coastal Margin

(2010) Maria W. Smith et al.   PLoS One

The science of hypoxia in the Northern Gulf of Mexico: A review

(2010) T.S. Bianchi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Ecological consequences of bacterioplankton lifestyles: changes in concepts are needed

(2010) Hans-Peter Grossart   Environmental Microbiology Reports

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Erratum: Biophysical controls on organic carbon fluxes in fluvial networks

(2009) Tom J. Battin et al.   Nature Geoscience

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Circumpolar synchrony in big river bacterioplankton

(2009) Byron C. Crump et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Delivery and cycling of phosphorus in rivers: A review

(2008) P.J.A. Withers et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Differences in Phosphorus and Nitrogen Delivery to The Gulf of Mexico from the Mississippi River Basin

(2007) Richard B. Alexander et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY