Spatial biodiversity of bacteria along the largest Arctic river determined by next-generation sequencing

Bacterial diversity in a large, temperate, heavily modified river, as determined by pyrosequencing

(2013) GE Schultz Jr et al.   AQUATIC MICROBIAL ECOLOGY

Biodegradation of carbamate pesticides by natural river biofilms in different seasons and their effects on biofilm community structure

(2013) Chien-Jung Tien et al.   ENVIRONMENTAL POLLUTION

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River

(2013) C. Staley et al.   JOURNAL OF APPLIED MICROBIOLOGY

Global carbon dioxide emissions from inland waters

(2013) Peter A. Raymond et al.   NATURE

Degradation of terrestrially derived macromolecules in the Amazon River

(2013) Nicholas D. Ward et al.   Nature Geoscience

Headwaters are critical reservoirs of microbial diversity for fluvial networks

(2013) K. Besemer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Influence of anthropogenic pollution on content of essential polyunsaturated fatty acids in links of food chain of river ecosystem

(2012) M. I. Gladyshev et al.   Contemporary Problems of Ecology

Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter: a demonstration using a high sensitivity cultivation-based approach

(2012) Keiji Watanabe et al.   ENVIRONMENTAL MICROBIOLOGY

Dissolved organic matter sources in large Arctic rivers

(2012) R.M.W. Amon et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Metabolic versatility of Gram-positive microbial isolates from contaminated river sediments

(2012) Tanja Narancic et al.   JOURNAL OF HAZARDOUS MATERIALS

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Uptake of amino acids by uncultivated bacterioplankton of a eutrophic water reservoir

(2011) O. V. Kolmakova et al.   Contemporary Problems of Ecology

Seasonal and Annual Fluxes of Nutrients and Organic Matter from Large Rivers to the Arctic Ocean and Surrounding Seas

(2011) Robert Max Holmes et al.   Estuaries and Coasts

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Phosphate-solubilization mechanism and in vitro plant growth promotion activity mediated by Pantoea eucalypti isolated from Lotus tenuis rhizosphere in the Salado River Basin (Argentina)

(2011) L.N. Castagno et al.   JOURNAL OF APPLIED MICROBIOLOGY

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

(2011) Rohit Ghai et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Input of organic carbon as determinant of nutrient fluxes, light climate and productivity in the Ob and Yenisey estuaries

(2010) Dag O. Hessen et al.   ESTUARINE COASTAL AND SHELF SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Circumpolar synchrony in big river bacterioplankton

(2009) Byron C. Crump et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA