Application of Chloroplast Phylogenomics to Resolve Species Relationships Within the Plant Genus Amaranthus

Ten years of barcoding at the African Centre for DNA Barcoding

(2017) B.S. Bezeng et al.   GENOME

Genomic and phenotypic evidence for an incomplete domestication of South American grain amaranth (Amaranthus caudatus )

(2017) Markus G. Stetter et al.   MOLECULAR ECOLOGY

Analysis of phylogenetic relationships and genome size evolution of the Amaranthus genus using GBS indicates the ancestors of an ancient crop

(2017) Markus G. Stetter et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Testing the Efficacy of DNA Barcodes for Identifying the Vascular Plants of Canada

(2017) Thomas W. A. Braukmann et al.   PLoS One

Study of molecular genetic diversity and evolutionary history of medicinally important endangered genus Chlorophytum using DNA barcodes

(2016) Swapnil M. Patil et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Pollen DNA barcoding: current applications and future prospects

(2016) Karen L. Bell et al.   GENOME

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia

(2016) Anna V. Williams et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Telling plant species apart with DNA: from barcodes to genomes

(2016) Peter M. Hollingsworth et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of greywater irrigation on germination, growth and photosynthetic characteristics in selected African leafy vegetables

(2016) E Lubbe et al.   WATER SA

The Complete Chloroplast Genome Sequences for Four Amaranthus Species (Amaranthaceae)

(2016) Lindsay Chaney et al.   Applications in Plant Sciences

ycf1, the most promising plastid DNA barcode of land plants

(2015) Wenpan Dong et al.   Scientific Reports

Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there

(2014) Charles C Davis et al.   BMC BIOLOGY

Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

(2014) Hui Huang et al.   BMC EVOLUTIONARY BIOLOGY

A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs

(2014) Wenpan Dong et al.   BMC GENETICS

Current knowledge on Amaranthus spp.: research avenues for improved nutritional value and yield in leafy amaranths in sub-Saharan Africa

(2014) Enoch G. Achigan-Dako et al.   EUPHYTICA

The Potential for Utilizing the Seed Crop Amaranth (Amaranthusspp.) in East Africa as an Alternative Crop to Support Food Security and Climate Change Mitigation

(2014) F. Reta Alemayehu et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

The complete chloroplast genome sequence of sugar beet (Beta vulgarisssp.vulgaris)

(2014) Han Li et al.   Mitochondrial DNA

Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae)

(2014) Peng-Fei Ma et al.   SYSTEMATIC BIOLOGY

Potential of Underutilized Traditional Vegetables and Legume Crops to Contribute to Food and Nutritional Security, Income and More Sustainable Production Systems

(2014) Andreas Ebert   Sustainability

Nutritional Components of Amaranth Seeds and Vegetables: A Review on Composition, Properties, and Uses

(2013) Petras R. Venskutonis et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Phylogenetic Analysis of 47 Chloroplast Genomes Clarifies the Contribution of Wild Species to the Domesticated Apple Maternal Line

(2013) Svetlana V. Nikiforova et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants

(2013) Yue Liu et al.   PLoS One

Comparative Genome Analysis and Phylogenetic Relationship of Order Liliales Insight from the Complete Plastid Genome Sequences of Two Lilies (Lilium longiflorum and Alstroemeria aurea)

(2013) Jung Sung Kim et al.   PLoS One

Comparative Chloroplast Genomes of Camellia Species

(2013) Jun-Bo Yang et al.   PLoS One

A Targeted Enrichment Strategy for Massively Parallel Sequencing of Angiosperm Plastid Genomes

(2013) Gregory W. Stull et al.   Applications in Plant Sciences

Plastid genomes and deep relationships among the commelinid monocot angiosperms

(2012) Craig F. Barrett et al.   CLADISTICS

Amaranth: A New Millennium Crop of Nutraceutical Values

(2012) Anu Rastogi et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The Complete Chloroplast and Mitochondrial Genome Sequences of Boea hygrometrica: Insights into the Evolution of Plant Organellar Genomes

(2012) Tongwu Zhang et al.   PLoS One

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Systematics and taxonomic delimitation of vegetable, grain and weed amaranths: a morphological and biochemical approach

(2011) Saubhik Das   GENETIC RESOURCES AND CROP EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

(2011) Yun-Jie Zhang et al.   PLoS One

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode

(2011) Kevin S. Burgess et al.   Methods in Ecology and Evolution

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

(2010) Laura Poliseno et al.   NATURE

Chloroplast genome sequences from total DNA for plant identification

(2010) Catherine J. Nock et al.   PLANT BIOTECHNOLOGY JOURNAL

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

Carotenoid composition and retinol equivalent in plants of nutritional and medicinal importance: Efficacy of β-carotene from Chenopodium album in retinol-deficient rats

(2009) Ravi Kumar Sangeetha et al.   FOOD CHEMISTRY

SNP Discovery via Genomic Reduction, Barcoding, and 454-Pyrosequencing in Amaranth

(2009) Peter J. Maughan et al.   Plant Genome

The value of sampling anomalous taxa in phylogenetic studies: Major clades of the Asteraceae revealed

(2008) Jose L. Panero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DNA barcoding the floras of biodiversity hotspots

(2008) R. Lahaye et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Phylogenomic Study of Birds Reveals Their Evolutionary History

(2008) S. J. Hackett et al.   SCIENCE