Flux Balance Analysis of Cyanobacterial Metabolism: The Metabolic Network of Synechocystis sp. PCC 6803

How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis

(2013) Robert Lehmann et al.   BMC BIOINFORMATICS

The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms

(2012) Christian Beck et al.   BMC GENOMICS

Photorespiration has a dual origin and manifold links to central metabolism

(2012) Hermann Bauwe et al.   CURRENT OPINION IN PLANT BIOLOGY

Discovery and Analysis of Cofactor-dependent Phosphoglycerate Mutase Homologs as Novel Phosphoserine Phosphatases inHydrogenobacter thermophilus

(2012) Yoko Chiba et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bioengineering of carbon fixation, biofuels, and biochemicals in cyanobacteria and plants

(2012) Lisa Rosgaard et al.   JOURNAL OF BIOTECHNOLOGY

Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth

(2012) R. Steuer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Impaired glycogen synthesis causes metabolic overflow reactions and affects stress responses in the cyanobacterium Synechocystis sp. PCC 6803

(2012) M. Grundel et al.   MICROBIOLOGY-SGM

Identification of Functional Differences in Metabolic Networks Using Comparative Genomics and Constraint-Based Models

(2012) Joshua J. Hamilton et al.   PLoS One

Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle

(2012) Jacob R. Waldbauer et al.   PLoS One

Reconstruction and Comparison of the Metabolic Potential of Cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803

(2012) Rajib Saha et al.   PLoS One

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis

(2012) J. Nogales et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ATP drives direct photosynthetic production of 1-butanol in cyanobacteria

(2012) E. I. Lan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multidimensional Optimality of Microbial Metabolism

(2012) R. Schuetz et al.   SCIENCE

Unusual cyanobacterial TCA cycles: not broken just different

(2012) Dirk Steinhauser et al.   TRENDS IN PLANT SCIENCE

Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC 51142

(2012) Trang T. Vu et al.   PLoS Computational Biology

MIRAGE: a functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks

(2012) Edward Vitkin et al.   GENOME BIOLOGY

Integration of expression data in genome-scale metabolic network reconstructions

(2012) Anna S. Blazier et al.   Frontiers in Physiology

The Cyanobacterial Circadian System: From Biophysics to Bioevolution

(2011) Carl Hirschie Johnson et al.   Annual Review of Biophysics

Reconstruction and verification of a genome-scale metabolic model for Synechocystis sp. PCC6803

(2011) Katsunori Yoshikawa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Renewable energy from Cyanobacteria: energy production optimization by metabolic pathway engineering

(2011) Naira Quintana et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Plastoquinone-9 biosynthesis in cyanobacteria differs from that in plants and involves a novel 4-hydroxybenzoate solanesyltransferase

(2011) Radin Sadre et al.   BIOCHEMICAL JOURNAL

Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach

(2011) Stefan Schuster et al.   BIOSYSTEMS

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803

(2011) Arnau Montagud et al.   Biotechnology Journal

FASIMU: flexible software for flux-balance computation series in large metabolic networks

(2011) Andreas Hoppe et al.   BMC BIOINFORMATICS

Cyanobacterial genomics for ecology and biotechnology

(2011) Wolfgang R Hess   CURRENT OPINION IN MICROBIOLOGY

Lifetimes of photosystem I and II proteins in the cyanobacteriumSynechocystissp. PCC 6803

(2011) Danny C.I. Yao et al.   FEBS LETTERS

Interplay between Flavodiiron Proteins and Photorespiration inSynechocystissp. PCC 6803

(2011) Yagut Allahverdiyeva et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mapping photoautotrophic metabolism with isotopically nonstationary 13C flux analysis

(2011) Jamey D. Young et al.   METABOLIC ENGINEERING

A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142

(2011) Jason E. McDermott et al.   Molecular BioSystems

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

A Day in the Life of Microcystis aeruginosa Strain PCC 7806 as Revealed by a Transcriptomic Analysis

(2011) Cécile Straub et al.   PLoS One

Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142

(2011) Jana Stöckel et al.   PLoS One

Modulation of the Major Paths of Carbon in Photorespiratory Mutants of Synechocystis

(2011) Jan Huege et al.   PLoS One

Fatty acid production in genetically modified cyanobacteria

(2011) X. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Tricarboxylic Acid Cycle in Cyanobacteria

(2011) S. Zhang et al.   SCIENCE

Engineering cyanobacteria to generate high-value products

(2011) Daniel C. Ducat et al.   TRENDS IN BIOTECHNOLOGY

Novel Metabolic Attributes of the Genus Cyanothece, Comprising a Group of Unicellular Nitrogen-Fixing Cyanobacteria

(2011) A. Bandyopadhyay et al.   mBio

Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

(2010) Arnau Montagud et al.   BMC Systems Biology

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth

(2010) Henning Knoop et al.   PLANT PHYSIOLOGY

Not just a circle: flux modes in the plant TCA cycle

(2010) Lee J. Sweetlove et al.   TRENDS IN PLANT SCIENCE

Metabolic Rhythms of the Cyanobacterium Cyanothece sp. ATCC 51142 Correlate with Modeled Dynamics of Circadian Clock

(2009) Jan Červený et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism

(2009) Pia Lindberg et al.   METABOLIC ENGINEERING

Evidence for a major role of antisense RNAs in cyanobacterial gene regulation

(2009) Jens Georg et al.   Molecular Systems Biology

Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde

(2009) Shota Atsumi et al.   NATURE BIOTECHNOLOGY

Photorespiratory 2-phosphoglycolate metabolism and photoreduction of O2 cooperate in high-light acclimation of Synechocystis sp. strain PCC 6803

(2009) Claudia Hackenberg et al.   PLANTA

Normalization of oligonucleotide arrays based on the least-variant set of genes

(2008) Stefano Calza et al.   BMC BIOINFORMATICS

The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants

(2008) M. Eisenhut et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes

(2008) J. Stockel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Is maximization of molar yield in metabolic networks favoured by evolution?

(2007) Stefan Schuster et al.   JOURNAL OF THEORETICAL BIOLOGY