Article
Multidisciplinary Sciences
Emma Petley, Hui-Fern Koay, Melissa A. Henderson, Kevin Sek, Kirsten L. Todd, Simon P. Keam, Junyun Lai, Imran G. House, Jasmine Li, Magnus Zethoven, Amanda X. Y. Chen, Amanda J. Oliver, Jessica Michie, Andrew J. Freeman, Lauren Giuffrida, Jack D. Chan, Angela Pizzolla, Jeffrey Y. W. Mak, Timothy R. McCulloch, Fernando Souza-Fonseca-Guimaraes, Conor J. Kearney, Rosemary Millen, Robert G. Ramsay, Nicholas D. Huntington, James McCluskey, Jane Oliaro, David P. Fairlie, Paul J. Neeson, Dale Godfrey, Paul A. Beavis, Phillip K. Darcy
Summary: The study reveals that activated MAIT cells can induce an IFN-gamma transcriptome in NK cells and enhance NK-dependent anti-cancer immunity in mice, suggesting a new potential avenue for cancer therapy.
NATURE COMMUNICATIONS
(2021)
Article
Multidisciplinary Sciences
Meagan R. Rollins, Jackson F. Raynor, Ebony A. Miller, Jonah Z. Butler, Ellen J. Spartz, Walker S. Lahr, Yun You, Adam L. Burrack, Branden S. Moriarity, Beau R. Webber, Ingunn M. Stromnes
Summary: TCR transgenic mice are a valuable tool for studying antigen-specific immune responses. The TRex methodology, which integrates TCRs specific to the self/tumor antigen mesothelin (Msln) into the Trac locus, is shown to improve the functional sensitivity of lower affinity TCRs and confer resistance to T cell functional loss. By comparing TCRs with the same specificity but different affinity, the Trac-targeted TCRs are shown to have increased avidity over transgenic TCRs while preserving physiological T cell development. Overall, the TRex methodology is an advanced tool for studying physiological antigen-specific T cell behavior.
NATURE COMMUNICATIONS
(2023)
Article
Nanoscience & Nanotechnology
Yulin Du, Yifan Lyu, Jie Lin, Chunran Ma, Qiang Zhang, Yutong Zhang, Liping Qiu, Weihong Tan
Summary: We manipulated the intermembrane distance between antigen-presenting cells (APCs) and T cells using DNA nanostructures of different sizes. Our results show that the axial distance of the contact zone is critical for T-cell activation, likely through modulating protein reorganization and mechanical force.
NATURE NANOTECHNOLOGY
(2023)
Article
Multidisciplinary Sciences
Kaitao Li, Zhou Yuan, Jintian Lyu, Eunseon Ahn, Simon J. Davis, Rafi Ahmed, Cheng Zhu
Summary: The study reveals that PD-1 inhibits the cooperative interaction between TCR-pMHC-CD8 by suppressing TCR proximal signaling, leading to reduced antigen recognition by T cells.
NATURE COMMUNICATIONS
(2021)
Review
Cell Biology
Salma Pathan-Chhatbar, Carina Drechsler, Kirsten Richter, Anna Morath, Wei Wu, Bo OuYang, Chenqi Xu, Wolfgang W. Schamel
Summary: Biological membranes are composed of a variety of lipids and proteins, with plasma membrane cholesterol playing a dual role in the activation of the αβ T cell receptor. Cholesterol binding to the TCR β subunit's TM domain maintains the TCR in an inactive state, while also increasing TCR clustering to enhance the sensitivity of the αβ T cell.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Shiming Pu, Qian Wang, Qin Liu, Hongxia Zhao, Zuping Zhou, Qiong Wu
Summary: The aim of this study was to investigate the effects of Nr1d1 on the senescence of Sca-1(+)CD31(-) cells. By manipulating the expression of Nr1d1 in these cells, the researchers found that Nr1d1 can inhibit cell proliferation and promote apoptosis in young cells, but promote cell proliferation and inhibit apoptosis in aged cells. Furthermore, Nr1d1 was found to be negatively associated with cell proliferation, apoptosis, and senescence-associated beta-galactosidase production in mouse cardiac myocyte (MCM) cell lines. The study also identified Nr1d1 as a potential therapeutic target for aging-related diseases.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Review
Biochemical Research Methods
Joy A. Pai, Ansuman T. Satpathy
Summary: This Review discusses methodological advances in high-throughput analysis of the TCR repertoire, particularly at single-cell resolution. Recent studies have developed high-throughput sequencing technologies to identify TCR sequences and analyze their antigen specificities, providing important insights into T cell-mediated immune responses.
Article
Cell Biology
Brendan E. Russ, Adele Barugahare, Pushkar Dakle, Kirril Tsyganov, Sara Quon, Bingfei Yu, Jasmine Li, Jason K. C. Lee, Moshe Olshansky, Zhaohren He, Paul F. Harrison, Michael See, Simone Nussing, Alison E. Morey, Vibha A. Udupa, Taylah J. Bennett, Axel Kallies, Cornelis Murre, Phillipe Collas, David Powell, Ananda W. Goldrath, Stephen J. Turner
Summary: The differentiation of naive CD8+ T lymphocytes into effector and memory cells involves large-scale changes in genome organization. This study used Hi-C to map the spatial organization of genome contacts in naive, effector, and memory CD8+ T cells and found distinctive architectural differences. Key transcription factors, such as BACH2 and SATB1, were shown to play a role in maintaining the naive chromatin state and restraining T cell differentiation.
Review
Immunology
Annaliese Clauze, Yoshimi Enose-Akahata, Steven Jacobson
Summary: This article reviews the research on T cell receptor repertoires and HTLV-1-specific clonotypes in HTLV-1-associated diseases ATL and HAM/TSP and discusses the implications of TCR clonal expansions on the progression and treatment of HTLV-1-associated diseases.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Immunology
June Guha, Raj Chari
Summary: DLG1 plays a crucial role in regulating T cell activation by promoting TCR-MC formation even before immunological synapse formation. Additionally, DLG1 acts as a bridge between TCR-ζ chain and ZAP70 while inhibiting the binding of phosphatase SHP1 to TCR-ζ. These effects ultimately lead to dysregulation of T cell activation in DLG1-deficient T cells, impacting vaccine response strategies.
Article
Biochemistry & Molecular Biology
Bin Bai, Tong Li, Jiahui Zhao, Yanjiao Zhao, Xiaonan Zhang, Tao Wang, Na Zhang, Xipeng Wang, Xinlei Ba, Jialin Xu, Yang Yu, Bing Wang
Summary: PTPN22 inhibits T cell activation by modulating the TCR signaling pathway. Suppression of PTPN22 activity results in reduced thymocyte count, altered cytokine expression in the spleen and lymph nodes, and affects positive and negative selection of thymocytes.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Immunology
Celine Maquet, Jerome Baiwir, Pauline Loos, Lucia Rodriguez-Rodriguez, Justine Javaux, Remy Sandor, Fabienne Perin, Padraic G. Fallon, Matthias Mack, Didier Cataldo, Laurent Gillet, Benedicte Machiels
Summary: Gammaherpesviruses have evolved together with their hosts to establish high infection prevalence and latency. Research shows that pulmonary infection with Murid herpesvirus 4 leads to recruitment of Ly6C(hi) monocytes into airways, modulating host immune response. The absence of Ly6C(hi) MOs is associated with severe virus-induced immunopathology and systemic release of inflammatory mediators.
SCIENCE IMMUNOLOGY
(2022)
Article
Agriculture, Multidisciplinary
Xinmiao Li, Feng Jiang, Yuhang Hu, Zhichao Lang, Yating Zhan, Rongrong Zhang, Qiqi Tao, Chengchu Luo, Jinglu Yu, Jianjian Zheng
Summary: Sch B inhibits liver fibrosis by regulating Ly6C(lo) macrophages and HSC FPT. The Wnt pathway plays an important role in the Sch B-mediated macrophage phenotypic transformation. Sch B may be a promising drug for liver fibrosis treatment.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2023)
Article
Multidisciplinary Sciences
Xiangjun Liu, Shanzhao Jin, Simeng Hu, Ruoyan Li, Haihao Pan, Yi Liu, Pan Lai, Deshu Xu, Jingru Sun, Ziyang Liu, Yumei Gao, Yifan Zhao, Fengjie Liu, Yu Xiao, Yingyi Li, Yujie Wen, Zhuojing Chen, Bufang Xu, Yuchieh Lin, Menglong Ran, Qianxi Li, Shuxia Yang, Hang Li, Ping Tu, Muzlifah Haniffa, Sarah A. Teichmann, Fan Bai, Yang Wang
Summary: Cutaneous T cell lymphoma (CTCL) is a heterogeneous group of non-Hodgkin lymphoma characterized by clonal malignant T cells. This study analyzed CTCL patient samples using single-cell RNA-seq, TCR and whole-exome sequencing, revealing the molecular profiles of malignant T cells and their association with the microenvironment and clinical outcomes.
NATURE COMMUNICATIONS
(2022)
Article
Biochemical Research Methods
Shirit Dvorkin, Reut Levi, Yoram Louzoun
Summary: The study introduces an autoencoder named ELATE to represent T cell receptors as real vectors for characterizing donors and specific receptors. By combining distance conserving autoencoders and Kernel Density Estimates, local repertoire density can be estimated to study repertoire properties.
PLOS COMPUTATIONAL BIOLOGY
(2021)
Article
Immunology
Gretchen Harms Pritchard, Aisling O'Hara Hall, David A. Christian, Sagie Wagage, Qun Fang, Gaia Muallem, Beena John, Arielle Glatman Zaretsky, William G. Dunn, Jacqueline Perrigoue, Steven L. Reiner, Christopher A. Hunter
JOURNAL OF IMMUNOLOGY
(2015)
Article
Microbiology
Hyang-Mi Lee, Anne Fleige, Ruth Forman, Sunglim Cho, Aly Azeem Khan, Ling-Li Lin, Duc T. Nguyen, Aisling O'Hara-Hall, Zhinan Yin, Christopher A. Hunter, Werner Muller, Li-Fan Lu
Article
Immunology
Carleigh A. O'Brien, Christopher Overall, Christoph Konradt, Aisling C. O'Hara Hall, Nikolas W. Hayes, Sagie Wagage, Beena John, David A. Christian, Christopher A. Hunter, Tajie H. Harris
JOURNAL OF IMMUNOLOGY
(2017)
Article
Cell Biology
Erik Wambre, Veronique Bajzik, Jonathan H. DeLong, Kimberly O'Brien, Quynh-Anh Nguyen, Cate Speake, Vivian H. Gersuk, Hannah A. DeBerg, Elizabeth Whalen, Chester Ni, Mary Farrington, David Jeong, David Robinson, Peter S. Linsley, Brian P. Vickery, William W. Kwok
SCIENCE TRANSLATIONAL MEDICINE
(2017)
Editorial Material
Immunology
Aisling O'Hara Hall, Jennifer E. Towne, Scott E. Plevy
Article
Immunology
Aisling O'Hara Hall, Daniel P. Beiting, Cristina Tato, Beena John, Guillaume Oldenhove, Claudia Gonzalez Lombana, Gretchen Harms Pritchard, Jonathan S. Silver, Nicolas Bouladoux, Jason S. Stumhofer, Tajie H. Harris, John Grainger, Ella D. Tait Wojno, Sagie Wagage, David S. Roos, Philip Scott, Laurence A. Turka, Sara Cherry, Steven L. Reiner, Daniel Cua, Yasmine Belkaid, M. Merle Elloso, Christopher A. Hunter
Article
Immunology
Kiyoshi Hirahara, Kamran Ghoreschi, Xiang-Ping Yang, Hayato Takahashi, Arian Laurence, Golnaz Vahedi, Giuseppe Sciume, Aisling O'Hara Hall, Christopher D. Dupont, Loise M. Francisco, Qian Chen, Masao Tanaka, Yuka Kanno, Hong-Wei Sun, Arlene H. Sharpe, Christopher A. Hunter, John J. O'Shea
Article
Immunology
Andrew Young, Eimear Linehan, Emily Hams, Aisling C. O'Hara Hall, Angela McClurg, James A. Johnston, Christopher A. Hunter, Padraic G. Fallon, Denise C. Fitzgerald
JOURNAL OF IMMUNOLOGY
(2012)
Article
Immunology
Sagie Wagage, Beena John, Bryan L. Krock, Aisling O'Hara Hall, Louise M. Randall, Christopher L. Karp, M. Celeste Simon, Christopher A. Hunter
JOURNAL OF IMMUNOLOGY
(2014)
Article
Immunology
Gaia M. Coppock, Lillian R. Aronson, Jihwan Park, Chengxiang Qiu, Jeongho Park, Jonathan H. DeLong, Enrico Radaelli, Katalin Susztak, Christopher A. Hunter
JOURNAL OF IMMUNOLOGY
(2020)
Article
Medicine, Research & Experimental
Brittany A. Goods, Michael H. Askenase, Erica Markarian, Hannah E. Beatty, Riley S. Drake, Ira Fleming, Jonathan H. DeLong, Naomi H. Philip, Charles C. Matouk, Issam A. Awad, Mario Zuccarello, Daniel F. Hanley, J. Christopher Love, Alex K. Shalek, Lauren H. Sansing
Summary: This study focused on intracerebral hemorrhage (ICH) in a patient, revealing the importance of inflammation in brain tissue injury and demonstrating dynamic changes in leukocyte responses over time using single-cell RNA-Seq. The findings suggest that sensitive methods such as scRNA-Seq could provide greater understanding of complex intracerebral events.
Article
Immunology
Joseph A. Perry, Lindsey Shallberg, Joseph T. Clark, Jodi A. Gullicksrud, Jonathan H. DeLong, Bonnie B. Douglas, Andrew P. Hart, Zachary Lanzar, Keenan O'Dea, Christoph Konradt, Jeongho Park, Juhi R. Kuchroo, Daniel Grubaugh, Arielle Glatman Zaretsky, Igor E. Brodsky, Rene de Waal Malefyt, David A. Christian, Arlene H. Sharpe, Christopher A. Hunter
Summary: This study demonstrates that T-reg cell function is modulated by the activation of the T cell receptor and the expression of PD-1. Blockade of PD-1 enhances eT(reg) cell activity, while upregulation of PD-L1 reduces T-reg cell populations. The expression of PD-1 acts as a sensor to rapidly adjust the pool of eT(reg) cells.
Letter
Gastroenterology & Hepatology
Jeremy A. Goettel, Daniel Kotlarz, Rohini Emani, James B. Canavan, Liza Konnikova, David Illig, Sandra M. Frei, Michael Field, Matthew Kowalik, Kaiyue Peng, Jordan Gringauz, Vanessa Mitsialis, Sarah M. Wall, Amy Tsou, Alexandra E. Griffith, Ying Huang, Joshua R. Friedman, Jennifer E. Towne, Scott E. Plevy, Aisling O'Hara Hall, Scott B. Snapper
CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY
(2019)