Linking genotype to phenotype in a changing ocean: inferring the genomic architecture of a blue mussel stress response with genome-wide association

Heterogeneity and concordance in locus-specific differentiation and introgression between species of towhees

(2017) S. E. Kingston et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird

(2017) Yann X. C. Bourgeois et al.   Royal Society Open Science

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

(2017) Jin Sun et al.   Nature Ecology & Evolution

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

Interacting environmental mosaics drive geographic variation in mussel performance and predation vulnerability

(2016) Kristy J. Kroeker et al.   ECOLOGY LETTERS

Transcriptomic Resources for the Rocky Intertidal Blue MusselMytilus edulisfrom the Gulf of Maine

(2016) Michael p. Lesser et al.   JOURNAL OF SHELLFISH RESEARCH

Climate change stressors cause metabolic depression in the blue mussel,Mytilus edulis, from the Gulf of Maine

(2016) Michael P. Lesser   LIMNOLOGY AND OCEANOGRAPHY

Characterization of the mantle transcriptome in bivalves: Pecten maximus, Mytilus edulis and Crassostrea gigas

(2016) Tejaswi Yarra et al.   Marine Genomics

Genomic variation at the tips of the adaptive radiation of Darwin's finches

(2016) Jaime A. Chaves et al.   MOLECULAR ECOLOGY

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

Genomic signatures of the plateless phenotype in the threespine stickleback

(2016) Anna B. Mazzarella et al.   Ecology and Evolution

Regulatory Architecture of Gene Expression Variation in the Threespine Stickleback Gasterosteus aculeatus

(2016) Victoria L. Pritchard et al.   G3-Genes Genomes Genetics

Long-term, high frequency in situ measurements of intertidal mussel bed temperatures using biomimetic sensors

(2016) Brian Helmuth et al.   Scientific Data

Genetic, Ecological and Morphological Distinctness of the Blue Mussels Mytilus trossulus Gould and M. edulis L. in the White Sea

(2016) Marina Katolikova et al.   PLoS One

The Phenotypic Effects of Spontaneous Mutations in Different Environments

(2015) Leigh C. Latta et al.   AMERICAN NATURALIST

RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

(2015) Rebeca Moreira et al.   BMC GENOMICS

The environmentally tuned transcriptomes of Mytilus mussels

(2015) B. L. Lockwood et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery

(2015) Andrew J. Pershing et al.   SCIENCE

Vulnerability and adaptation of US shellfisheries to ocean acidification

(2015) Julia A. Ekstrom et al.   Nature Climate Change

Across-shelf distribution of blue mussel larvae in the northern Gulf of Maine: consequences for population connectivity and a species range boundary

(2015) Philip O. Yund et al.   Royal Society Open Science

Climate change, adaptation, and phenotypic plasticity: the problem and the evidence

(2014) Juha Merilä et al.   Evolutionary Applications

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Estimating quantitative genetic parameters in wild populations: a comparison of pedigree and genomic approaches

(2014) Camillo Bérénos et al.   MOLECULAR ECOLOGY

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Impacts of ocean acidification on marine organisms: quantifying sensitivities and interaction with warming

(2013) Kristy J. Kroeker et al.   GLOBAL CHANGE BIOLOGY

Biomineral Proteins from Mytilus edulis Mantle Tissue Transcriptome

(2013) Andy Freer et al.   MARINE BIOTECHNOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Dramatic Variability of the Carbonate System at a Temperate Coastal Ocean Site (Beaufort, North Carolina, USA) Is Regulated by Physical and Biogeochemical Processes on Multiple Timescales

(2013) Zackary I. Johnson et al.   PLoS One

Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon

(2013) M. D. Shapiro et al.   SCIENCE

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

Biotic and Human Vulnerability to Projected Changes in Ocean Biogeochemistry over the 21st Century

(2013) Camilo Mora et al.   PLOS BIOLOGY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES

(2012) Zachariah Gompert et al.   EVOLUTION

Food availability outweighs ocean acidification effects in juvenileMytilus edulis: laboratory and field experiments

(2012) Jörn Thomsen et al.   GLOBAL CHANGE BIOLOGY

Impacts of seawater acidification on mantle gene expression patterns of the Baltic Sea blue mussel: implications for shell formation and energy metabolism

(2012) Anne K. Hüning et al.   MARINE BIOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Genomic resource development for shellfish of conservation concern

(2012) Emma B. Timmins-Schiffman et al.   Molecular Ecology Resources

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Massively Parallel RNA Sequencing Identifies a Complex Immune Gene Repertoire in the lophotrochozoan Mytilus edulis

(2012) Eva E. R. Philipp et al.   PLoS One

Bayesian variable selection regression for genome-wide association studies and other large-scale problems

(2011) Yongtao Guan et al.   Annals of Applied Statistics

Creation of a Gilded Trap by the High Economic Value of the Maine Lobster Fishery

(2011) R. S. STENECK et al.   CONSERVATION BIOLOGY

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

Experimental Designs for Robust Detection of Effects in Genome-Wide Case–Control Studies

(2011) Roderick D. Ball   GENETICS

Response of intertidal populations to climate: Effects of extreme events versus long term change

(2011) David S. Wethey et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Death by dissolution: Sediment saturation state as a mortality factor for juvenile bivalves

(2011) Mark A. Green et al.   LIMNOLOGY AND OCEANOGRAPHY

Step-changes in the physical, chemical and biological characteristics of the Gulf of Maine, as documented by the GNATS time series

(2011) WM Balch et al.   MARINE ECOLOGY PROGRESS SERIES

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Marine calcifiers exhibit mixed responses to CO2-induced ocean acidification

(2009) J. B. Ries et al.   GEOLOGY

Large-scale redistribution of maximum fisheries catch potential in the global ocean under climate change

(2009) WILLIAM W. L. CHEUNG et al.   GLOBAL CHANGE BIOLOGY

Species-specific variation in larval survival and patterns of distribution for the blue mussels Mytilus edulis and Mytilus trossulus in the Gulf of Maine

(2009) Susan Hayhurst et al.   JOURNAL OF MOLLUSCAN STUDIES

Bayesian statistical methods for genetic association studies

(2009) Matthew Stephens et al.   NATURE REVIEWS GENETICS

Mapping complex disease traits with global gene expression

(2009) William Cookson et al.   NATURE REVIEWS GENETICS

Niches, models, and climate change: Assessing the assumptions and uncertainties

(2009) J. A. Wiens et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip

(2009) Chris C. A. Spencer et al.   PLoS Genetics

Prioritizing Climate Change Adaptation Needs for Food Security in 2030

(2008) D. B. Lobell et al.   SCIENCE

Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits

(2008) William G. Hill et al.   PLoS Genetics

Climate change and evolution: disentangling environmental and genetic responses

(2007) P. GIENAPP et al.   MOLECULAR ECOLOGY