A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird

The role of selection and historical factors in driving population differentiation along an elevational gradient in an island bird

(2016) J. A. M. Bertrand et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Candidate Gene Analysis Suggests Untapped Genetic Complexity in Melanin-Based Pigmentation in Birds

(2016) Yann X. C. Bourgeois et al.   JOURNAL OF HEREDITY

Mutations in different pigmentation genes are associated with parallel melanism in island flycatchers

(2016) J. Albert C. Uy et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Condition-dependence, pleiotropy and the handicap principle of sexual selection in melanin-based colouration

(2015) Alexandre Roulin   BIOLOGICAL REVIEWS

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

The Genome of the “Great Speciator” Provides Insights into Bird Diversification

(2015) Luca Cornetti et al.   Genome Biology and Evolution

Transcriptomics of colour patterning and coloration shifts in crows

(2015) J. W. Poelstra et al.   MOLECULAR ECOLOGY

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

Morph-specific genetic and environmental variation in innate and acquired immune response in a color polymorphic raptor

(2015) Laura Gangoso et al.   OECOLOGIA

Morphological and plumage colour variation in the Réunion grey white-eye (Aves:Zosterops borbonicus): assessing the role of selection

(2014) Josselin Cornuault et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Genome-Wide Inference of Ancestral Recombination Graphs

(2014) Matthew D. Rasmussen et al.   PLoS Genetics

Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

(2013) Anthony G Doran et al.   BMC BIOINFORMATICS

Extremely reduced dispersal and gene flow in an island bird

(2013) J A M Bertrand et al.   HEREDITY

Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome

(2013) Yann X. C. Bourgeois et al.   Molecular Ecology Resources

Sexual Dimorphism in Melanin Pigmentation, Feather Coloration and Its Heritability in the Barn Swallow (Hirundo rustica)

(2013) Nicola Saino et al.   PLoS One

Adaptive Evolution of Multiple Traits Through Multiple Mutations at a Single Gene

(2013) C. R. Linnen et al.   SCIENCE

Genetics of colouration in birds

(2013) Alexandre Roulin et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Role of Rab family GTPases and their effectors in melanosomal logistics

(2012) N. Ohbayashi et al.   JOURNAL OF BIOCHEMISTRY

The genomic landscape of species divergence in Ficedula flycatchers

(2012) Hans Ellegren et al.   NATURE

Investigating the Role of the Melanocortin-1 Receptor Gene in an Extreme Case of Microgeographical Variation in the Pattern of Melanin-Based Plumage Pigmentation

(2012) Yann X. C. Bourgeois et al.   PLoS One

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

GPM6B regulates osteoblast function and induction of mineralization by controlling cytoskeleton and matrix vesicle release

(2011) Ksenija Drabek et al.   JOURNAL OF BONE AND MINERAL RESEARCH

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

(2011) Mathieu Joron et al.   NATURE

Pale and dark reddish melanic tawny owls differentially regulate the level of blood circulating POMC prohormone in relation to environmental conditions

(2011) Alexandre Roulin et al.   OECOLOGIA

Usefulness of alkaline hydrogen peroxide oxidation to analyze eumelanin and pheomelanin in various tissue samples: application to chemical analysis of human hair melanins

(2011) Shosuke Ito et al.   Pigment Cell & Melanoma Research

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Isolation and characterization of twelve polymorphic microsatellite loci for investigating an extreme case of microgeographical variation in an island bird (Zosterops borbonicus)

(2011) Joris A. M. Bertrand et al.   Conservation Genetics Resources

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

Assembly of the Biogenesis of Lysosome-related Organelles Complex-3 (BLOC-3) and Its Interaction with Rab9

(2010) Daniel P. Kloer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Colour polymorphism and correlated characters: genetic mechanisms and evolution

(2010) JEFFREY S. MCKINNON et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Convergence in pigmentation at multiple levels: mutations, genes and function

(2010) M. Manceau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Difference in Plumage Color Used in Species Recognition between Incipient Species Is Linked to a Single Amino Acid Substitution in the Melanocortin‐1 Receptor

(2009) J. Albert C. Uy et al.   AMERICAN NATURALIST

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genetic architecture of quantitative traits in mice, flies, and humans

(2009) J. Flint et al.   GENOME RESEARCH

AP-1 and KIF13A coordinate endosomal sorting and positioning during melanosome biogenesis

(2009) Cédric Delevoye et al.   JOURNAL OF CELL BIOLOGY

Melanism in Peromyscus Is Caused by Independent Mutations in Agouti

(2009) Evan P. Kingsley et al.   PLoS One

On the Origin and Spread of an Adaptive Allele in Deer Mice

(2009) C. R. Linnen et al.   SCIENCE

NATURAL SELECTION ALONG AN ENVIRONMENTAL GRADIENT: A CLASSIC CLINE IN MOUSE PIGMENTATION

(2008) Lynne M. Mullen et al.   EVOLUTION

The ocular albinism type 1 protein, an intracellular G protein-coupled receptor, regulates melanosome transport in pigment cells

(2008) Ilaria Palmisano et al.   HUMAN MOLECULAR GENETICS

Membrane Glycoprotein M6B Interacts with the Human Serotonin Transporter

(2008) Anja Winther Fjorback et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

An analysis of population genetic differentiation and genotype-phenotype association across the hybrid zone of carrion and hooded crows using microsatellites andMC1R

(2008) FREDRIK HAAS et al.   MOLECULAR ECOLOGY

An update on the honesty of melanin-based color signals in birds

(2008) Kevin J. McGraw   Pigment Cell & Melanoma Research

Novel MITF targets identified using a two-step DNA microarray strategy

(2008) Keith S. Hoek et al.   Pigment Cell & Melanoma Research

Pleiotropy in the melanocortin system, coloration and behavioural syndromes

(2008) A DUCREST et al.   TRENDS IN ECOLOGY & EVOLUTION

Are we there yet? Tracking the development of new model systems

(2008) Arhat Abzhanov et al.   TRENDS IN GENETICS