Biogeography and diversification of Rhegmatorhina (Aves: Thamnophilidae): Implications for the evolution of Amazonian landscapes during the Quaternary

Systematics and biogeography of the Automolus infuscatus complex (Aves; Furnariidae): Cryptic diversity reveals western Amazonia as the origin of a transcontinental radiation

(2017) Eduardo D. Schultz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hydroclimate changes across the Amazon lowlands over the past 45,000 years

(2017) Xianfeng Wang et al.   NATURE

Biogeography of the Neotropical genus Malacoptila (Aves: Bucconidae): the influence of the Andean orogeny, Amazonian drainage evolution and palaeoclimate

(2016) Mateus Ferreira et al.   JOURNAL OF BIOGEOGRAPHY

Matching loci surveyed to questions asked in phylogeography

(2016) Chih-Ming Hung et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

How Many Kinds of Birds Are There and Why Does It Matter?

(2016) George F. Barrowclough et al.   PLoS One

Late quaternary dynamics in the Madeira river basin, southern Amazonia (Brazil), as revealed by paleomorphological analysis

(2015) Ericson H. Hayakawa et al.   ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS

The tempo of trait divergence in geographic isolation: Avian speciation across the Marañon Valley of Peru

(2015) Benjamin M. Winger et al.   EVOLUTION

Hybridization in headwater regions, and the role of rivers as drivers of speciation in Amazonian birds

(2015) Jason T. Weir et al.   EVOLUTION

Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow

(2015) Michael G. Harvey et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cryptic speciation in the white-shouldered antshrike (Thamnophilus aethiops, Aves – Thamnophilidae): The tale of a transcontinental radiation across rivers in lowland Amazonia and the northeastern Atlantic Forest

(2015) Gregory Thom et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The emerging field of geogenomics: Constraining geological problems with genetic data

(2014) Paul A. Baker et al.   EARTH-SCIENCE REVIEWS

Pleistocene speciation is not refuge speciation

(2014) Valentí Rull   JOURNAL OF BIOGEOGRAPHY

Multiple speciation across the Andes and throughout Amazonia: the case of the spot-backed antbird species complex (Hylophylax naevius/Hylophylax naevioides)

(2014) Alexandre M. Fernandes et al.   JOURNAL OF BIOGEOGRAPHY

The drivers of tropical speciation

(2014) Brian Tilston Smith et al.   NATURE

Systematics of the obligate ant-following clade of antbirds (Aves: Passeriformes: Thamnophilidae)

(2014) Morton L. Isler et al.   Wilson Journal of Ornithology

Neogene–Quaternary sedimentary and paleovegetation history of the eastern Solimões Basin, central Amazon region

(2013) Afonso César Rodrigues Nogueira et al.   JOURNAL OF SOUTH AMERICAN EARTH SCIENCES

Cryptic patterns of diversification of a widespread Amazonian Woodcreeper species complex (Aves: Dendrocolaptidae) inferred from multilocus phylogenetic analysis: Implications for historical biogeography and taxonomy

(2013) Tiago Sousa-Neves et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Climate change patterns in Amazonia and biodiversity

(2013) Hai Cheng et al.   Nature Communications

Inferring the origins of lowland Neotropical birds

(2012)   AUK

Phylogeography of the chestnut-tailed antbird (Myrmeciza hemimelaena) clarifies the role of rivers in Amazonian biogeography

(2012) Alexandre M. Fernandes et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeny and comparative phylogeography ofSclerurus(Aves: Furnariidae) reveal constant and cryptic diversification in an old radiation of rain forest understorey specialists

(2012) Fernando M. d’Horta et al.   JOURNAL OF BIOGEOGRAPHY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A New Area of Endemism for Amazonian Birds in the Rio Negro Basin

(2012) Sérgio H. Borges et al.   Wilson Journal of Ornithology

Global estimates of the value of ecosystems and their services in monetary units

(2012) Rudolf de Groot et al.   Ecosystem Services

A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years

(2011) C. C. Ribas et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Late Miocene paleogeography of the Amazon Basin and the evolution of the Amazon River system

(2010) Edgardo M. Latrubesse et al.   EARTH-SCIENCE REVIEWS

Temporal and spatial diversification of Pteroglossus araçaris (AVES: Ramphastidae) in the neotropics: Constant rate of diversification does not support an increase in radiation during the Pleistocene

(2010) Swati Patel et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Late Miocene onset of the Amazon River and the Amazon deep-sea fan: Evidence from the Foz do Amazonas Basin

(2009) J. Figueiredo et al.   GEOLOGY

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY