Biogeography of the Neotropical genus Malacoptila (Aves: Bucconidae): the influence of the Andean orogeny, Amazonian drainage evolution and palaeoclimate

Late quaternary dynamics in the Madeira river basin, southern Amazonia (Brazil), as revealed by paleomorphological analysis

(2015) Ericson H. Hayakawa et al.   ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS

The BPP program for species tree estimation and species delimitation

(2015) Ziheng Yang   Current Zoology

The tempo of trait divergence in geographic isolation: Avian speciation across the Marañon Valley of Peru

(2015) Benjamin M. Winger et al.   EVOLUTION

Hybridization in headwater regions, and the role of rivers as drivers of speciation in Amazonian birds

(2015) Jason T. Weir et al.   EVOLUTION

Cryptic speciation in the white-shouldered antshrike (Thamnophilus aethiops, Aves – Thamnophilidae): The tale of a transcontinental radiation across rivers in lowland Amazonia and the northeastern Atlantic Forest

(2015) Gregory Thom et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Brazil's Soy Moratorium

(2015) H. K. Gibbs et al.   SCIENCE

Mid-Late Pleistocene OSL chronology in western Amazonia and implications for the transcontinental Amazon pathway

(2015) Dilce F. Rossetti et al.   SEDIMENTARY GEOLOGY

The BPP program for species tree estimation and species delimitation

(2015) Ziheng Yang   Current Zoology

Multiple speciation across the Andes and throughout Amazonia: the case of the spot-backed antbird species complex (Hylophylax naevius/Hylophylax naevioides)

(2014) Alexandre M. Fernandes et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeny and historical biogeography of gnateaters (Passeriformes, Conopophagidae) in the South America forests

(2014) Henrique Batalha-Filho et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The drivers of tropical speciation

(2014) Brian Tilston Smith et al.   NATURE

Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades

(2014) Nicholas J. Matzke   SYSTEMATIC BIOLOGY

The avian biogeography of an Amazonian headwater: the Upper Ucayali River, Peru

(2014) Michael G. Harvey et al.   Wilson Journal of Ornithology

Avian species composition across the Amazon River: the roles of dispersal limitation and environmental heterogeneity

(2013) Lars Y. Pomara et al.   JOURNAL OF BIOGEOGRAPHY

Neogene–Quaternary sedimentary and paleovegetation history of the eastern Solimões Basin, central Amazon region

(2013) Afonso César Rodrigues Nogueira et al.   JOURNAL OF SOUTH AMERICAN EARTH SCIENCES

Cryptic patterns of diversification of a widespread Amazonian Woodcreeper species complex (Aves: Dendrocolaptidae) inferred from multilocus phylogenetic analysis: Implications for historical biogeography and taxonomy

(2013) Tiago Sousa-Neves et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Biogeography and spatio-temporal diversification of Selenidera and Andigena Toucans (Aves: Ramphastidae)

(2013) Holly L. Lutz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bamboo-Dominated Forests of the Southwest Amazon: Detection, Spatial Extent, Life Cycle Length and Flowering Waves

(2013) Anelena L. de Carvalho et al.   PLoS One

The Hill of Six Lakes revisited: new data and re-evaluation of a key Pleistocene Amazon site

(2013) Carlos D'Apolito et al.   QUATERNARY SCIENCE REVIEWS

Climate change patterns in Amazonia and biodiversity

(2013) Hai Cheng et al.   Nature Communications

Inferring the origins of lowland Neotropical birds

(2012)   AUK

Phylogeography of the chestnut-tailed antbird (Myrmeciza hemimelaena) clarifies the role of rivers in Amazonian biogeography

(2012) Alexandre M. Fernandes et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeny and comparative phylogeography ofSclerurus(Aves: Furnariidae) reveal constant and cryptic diversification in an old radiation of rain forest understorey specialists

(2012) Fernando M. d’Horta et al.   JOURNAL OF BIOGEOGRAPHY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multilocus phylogeography of the Wedge-billed Woodcreeper Glyphorynchus spirurus (Aves, Furnariidae) in lowland Amazonia: Widespread cryptic diversity and paraphyly reveal a complex diversification pattern

(2012) Alexandre M. Fernandes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Diversification in Adelomyia hummingbirds follows Andean uplift

(2011) JAIME A. CHAVES et al.   MOLECULAR ECOLOGY

Molecular phylogeny, biogeography and insights into the origin of parthenogenesis in the Neotropical genus Leposoma (Squamata: Gymnophthalmidae): Ancient links between the Atlantic Forest and Amazonia

(2011) Katia C.M. Pellegrino et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years

(2011) C. C. Ribas et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High dispersal ability inhibits speciation in a continental radiation of passerine birds

(2011) S. Claramunt et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Late Miocene paleogeography of the Amazon Basin and the evolution of the Amazon River system

(2010) Edgardo M. Latrubesse et al.   EARTH-SCIENCE REVIEWS

Miocene drainage reversal of the Amazon River driven by plate–mantle interaction

(2010) G. E. Shephard et al.   Nature Geoscience

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Gauging the effects of sampling failure in biogeographical analysis

(2009) Alan H. Turner et al.   JOURNAL OF BIOGEOGRAPHY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments

(2009) J-F. FLOT   Molecular Ecology Resources

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY

Comment on "The Latitudinal Gradient in Recent Speciation and Extinction Rates of Birds and Mammals"

(2008) Joseph A. Tobias et al.   SCIENCE

Rise of the Andes

(2008) C. N. Garzione et al.   SCIENCE