Evolution of the Translocation and Assembly Module (TAM)

TtOmp85, a β-Barrel Assembly Protein, Functions by Barrel Augmentation

(2015) Luisa Estrada Mallarino et al.   BIOCHEMISTRY

Alteration in abundance of specific membrane proteins ofAggregatibacter actinomycetemcomitansis attributed to deletion of the inner membrane protein MorC

(2015) Kenneth P. Smith et al.   PROTEOMICS

Of linkers and autochaperones: an unambiguous nomenclature to identify common and uncommon themes for autotransporter secretion

(2014) Igor Drobnak et al.   MOLECULAR MICROBIOLOGY

Global discovery of colonization determinants in the squid symbiontVibrio fischeri

(2014) John F. Brooks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A mortise–tenon joint in the transmembrane domain modulates autotransporter assembly into bacterial outer membranes

(2014) Denisse L. Leyton et al.   Nature Communications

Reconstitution of a nanomachine driving the assembly of proteins into bacterial outer membranes

(2014) Hsin-Hui Shen et al.   Nature Communications

Reconstitution of bacterial autotransporter assembly using purified components

(2014) Giselle Roman-Hernandez et al.   eLife

A comprehensive analysis of the Omp85/TpsB protein superfamily structural diversity, taxonomic occurrence, and evolution

(2014) Eva Heinz et al.   Frontiers in Microbiology

Recombinant expression, purification, crystallization and preliminary X-ray diffraction analysis of the C-terminal DUF490963–1138domain of TamB fromEscherichia coli

(2014) Inokentijs Josts et al.   Acta Crystallographica Section F-Structural Biology Communications

Being Aquifex aeolicus: Untangling a Hyperthermophile’s Checkered Past

(2013) Robert J.M. Eveleigh et al.   Genome Biology and Evolution

Ultrastructural Analysis of the Rugose Cell Envelope of a Member of the Pasteurellaceae Family

(2013) F. Azari et al.   JOURNAL OF BACTERIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structural insight into the biogenesis of β-barrel membrane proteins

(2013) Nicholas Noinaj et al.   NATURE

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

L-form bacteria, cell walls and the origins of life

(2013) J. Errington   Open Biology

BB0324 and BB0028 are constituents of the Borrelia burgdorferi β-barrel assembly machine (BAM) complex

(2012) Tiffany R Lenhart et al.   BMC MICROBIOLOGY

Structure and Conservation of the Periplasmic Targeting Factor Tic22 Protein from Plants and Cyanobacteria

(2012) Joanna Tripp et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The evolution of new lipoprotein subunits of the bacterial outer membrane BAM complex

(2012) Khatira Anwari et al.   MOLECULAR MICROBIOLOGY

From self sufficiency to dependence: mechanisms and factors important for autotransporter biogenesis

(2012) Denisse L. Leyton et al.   NATURE REVIEWS MICROBIOLOGY

Discovery of an archetypal protein transport system in bacterial outer membranes

(2012) Joel Selkrig et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

(2012) Martin Christen Frølund Thomsen et al.   NUCLEIC ACIDS RESEARCH

A Bioinformatic Strategy for the Detection, Classification and Analysis of Bacterial Autotransporters

(2012) Nermin Celik et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Evolution of the β-barrel assembly machinery

(2012) Chaille T. Webb et al.   TRENDS IN MICROBIOLOGY

β-Barrel Membrane Protein Assembly by the Bam Complex

(2011) Christine L. Hagan et al.   Annual Review of Biochemistry

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways

(2011) Mohan Babu et al.   PLoS Genetics

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Complete Genome Sequence and Comparative Metabolic Profiling of the Prototypical Enteroaggregative Escherichia coli Strain 042

(2010) Roy R. Chaudhuri et al.   PLoS One

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Roles of the Outer Membrane Protein AsmA of Salmonella enterica in the Control of marRAB Expression and Invasion of Epithelial Cells

(2009) A. I. Prieto et al.   JOURNAL OF BACTERIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Borrelia burgdorferilocus BB0795 encodes a BamA orthologue required for growth and efficient localization of outer membrane proteins

(2009) Tiffany R. Lenhart et al.   MOLECULAR MICROBIOLOGY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

Membrane protein architects: the role of the BAM complex in outer membrane protein assembly

(2009) Timothy J. Knowles et al.   NATURE REVIEWS MICROBIOLOGY

Omp85Tt from Thermus thermophilus HB27: an Ancestral Type of the Omp85 Protein Family

(2008) J. Nesper et al.   JOURNAL OF BACTERIOLOGY

Membrane Morphology and Leukotoxin Secretion Are Associated with a Novel Membrane Protein of Aggregatibacter actinomycetemcomitans

(2008) C. V. Gallant et al.   JOURNAL OF BACTERIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION