ThePhysarum polycephalumGenome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling

The Acanthamoeba Shikimate Pathway has a Unique Molecular Arrangement and is Essential for Aromatic Amino Acid Biosynthesis

(2015) Fiona L. Henriquez et al.   PROTIST

Cell signaling during development of Dictyostelium

(2014) William F. Loomis   DEVELOPMENTAL BIOLOGY

Two Dictyostelium tyrosine kinase–like kinases function in parallel, stress-induced STAT activation pathways

(2014) Tsuyoshi Araki et al.   MOLECULAR BIOLOGY OF THE CELL

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

The cyclic AMP phosphodiesterase RegA critically regulates encystation in social and pathogenic amoebas

(2013) Qingyou Du et al.   CELLULAR SIGNALLING

The Genome of the Foraminiferan Reticulomyxa filosa

(2013) Gernot Glöckner et al.   CURRENT BIOLOGY

A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes

(2013) Mareike Schallenberg-Rüdinger et al.   RNA Biology

Cell cycle control across the eukaryotic kingdom

(2013) Hirofumi Harashima et al.   TRENDS IN CELL BIOLOGY

Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling

(2013) Michael Clarke et al.   GENOME BIOLOGY

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Evolution of SH2 domains and phosphotyrosine signalling networks

(2012) B. A. Liu et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases

(2012) H. Suga et al.   Science Signaling

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

(2012) Alice Barkan et al.   PLoS Genetics

Evolutionary crossroads in developmental biology: Dictyostelium discoideum

(2011) P. Schaap   DEVELOPMENT

Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication

(2011) A. J. Heidel et al.   GENOME RESEARCH

DNA packaging proteins Glom and Glom2 coordinately organize the mitochondrial nucleoid of Physarum polycephalum

(2011) Kie Itoh et al.   MITOCHONDRION

Complete characterization of the edited transcriptome of the mitochondrion of Physarum polycephalum using deep sequencing of RNA

(2011) R. Bundschuh et al.   NUCLEIC ACIDS RESEARCH

Evolution of networks and sequences in eukaryotic cell cycle control

(2011) F. R. Cross et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Plant-type mitochondrial RNA editing in the protist Naegleria gruberi

(2011) M. Rudinger et al.   RNA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Phosphotyrosine Signaling: Evolving a New Cellular Communication System

(2010) Wendell A. Lim et al.   CELL

DYW-type PPR proteins in a heterolobosean protist: Plant RNA editing factors involved in an ancient horizontal gene transfer?

(2010) Volker Knoop et al.   FEBS LETTERS

FUNCTIONAL MAPPING OF THE BRANCHED SIGNAL TRANSDUCTION PATHWAY THAT CONTROLS SPORULATION IN Physarum polycephalum

(2010) Christine Starostzik et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Rules for Biologically Inspired Adaptive Network Design

(2010) A. Tero et al.   SCIENCE

Functional Evolution of Cyclin-Dependent Kinases

(2009) John H. Doonan et al.   MOLECULAR BIOTECHNOLOGY

Physarumnitric oxide synthases: genomic structures and enzymology of recombinant proteins

(2008) Simon Messner et al.   BIOCHEMICAL JOURNAL

A first glimpse at the transcriptome of Physarum polycephalum

(2008) Gernot Glöckner et al.   BMC GENOMICS

The Actinome of Dictyostelium discoideum in Comparison to Actins and Actin-Related Proteins from Other Organisms

(2008) Jayabalan M. Joseph et al.   PLoS One

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE