Draft Genomes, Phylogenetic Reconstruction, and Comparative Genomics of Two Novel Cohabiting Bacterial Symbionts Isolated fromFrankliniella occidentalis

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway

(2015) Mark A. Miller et al.   Evolutionary Bioinformatics

Re-examination of the taxonomic status of Enterobacter helveticus, Enterobacter pulveris and Enterobacter turicensis as members of the genus Cronobacter and their reclassification in the genera Franconibacter gen. nov. and Siccibacter gen. nov. as Franconibacter helveticus comb. nov., Franconibacter pulveris comb. nov. and Siccibacter turicensis comb. nov., respectively

(2014) R. Stephan et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A Reference Pan-Genome Approach to Comparative Bacterial Genomics: Identification of Novel Epidemiological Markers in Pathogenic Campylobacter

(2014) Guillaume Méric et al.   PLoS One

Inferring ancient metabolism using ancestral core metabolic models of enterobacteria

(2013) David J Baumler et al.   BMC Systems Biology

Pathogenicity and infection strategies of the fire blight pathogen Erwinia amylovora in Rosaceae: State of the art

(2013) K. Vrancken et al.   MICROBIOLOGY-SGM

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative Genomics of 12 Strains of Erwinia amylovora Identifies a Pan-Genome with a Large Conserved Core

(2013) Rachel A. Mann et al.   PLoS One

Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics

(2013) Theo H.M. Smits et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): Proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov. as Lelliottia nimipressuralis comb. nov. and Lelliottia amnigena comb. nov., respectively, E. gergoviae and E. pyrinus into Pluralibacter gen. nov. as Pluralibacter gergoviae comb. nov. and Pluralibacter pyrinus comb. nov., respectively, E. cowanii, E. radicincitans, E. oryzae and E. arachidis into Kosakonia gen. nov. as Kosakonia cowanii comb. nov., Kosakonia radicincitans comb. nov., Kosakonia oryzae comb. nov. and Kosakonia arachidis comb. nov., respectively, and E. turicensis, E. helveticus and E. pulveris into Cronobacter as Cronobacter zurichensis nom. nov., Cronobacter helveticus comb. nov. and Cronobacter pulveris comb. nov., respectively, and emended description of the genera Enterobacter and Cronobacter

(2013) Carrie Brady et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis

(2012) S. Kumar et al.   BIOINFORMATICS

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

(2012) K. A. Jolley et al.   MICROBIOLOGY-SGM

DotU and VgrG, Core Components of Type VI Secretion Systems, Are Essential for Francisella LVS Pathogenicity

(2012) Jeanette E. Bröms et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter

(2012) Samuel K. Sheppard et al.   Genes

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches

(2011) Filip Husník et al.   BMC BIOLOGY

Comparative genomics of the type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins

(2011) Pieter De Maayer et al.   BMC GENOMICS

An AT Mutational Bias in the Tiny GC-Rich Endosymbiont Genome of Hodgkinia

(2011) James T. Van Leuven et al.   Genome Biology and Evolution

Reductive Evolution of Bacterial Genome in Insect Gut Environment

(2011) Naruo Nikoh et al.   Genome Biology and Evolution

Massive Genomic Decay in Serratia symbiotica, a Recently Evolved Symbiont of Aphids

(2011) Gaelen R. Burke et al.   Genome Biology and Evolution

Compatibility of spinosad with predaceous mites (Acari) used to control Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae)

(2011) Touhidur Rahman et al.   PEST MANAGEMENT SCIENCE

Erwinia aphidicola isolated from commercial bean seeds (Phaseolus vulgaris)

(2011) F. Marín et al.   PHYTOPARASITICA

Genomics and current genetic understanding of Erwinia amylovora and the fire blight antagonist Pantoea vagans

(2011) Tim Kamber et al.   TREES-STRUCTURE AND FUNCTION

Comparative Genomics of Erwinia amylovora and Related Erwinia Species—What do We Learn?

(2011) Youfu Zhao et al.   Genes

Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae

(2010) Michael Kube et al.   BMC GENOMICS

Genome Sequence of the Biocontrol Agent Pantoea vagans Strain C9-1

(2010) T. H. M. Smits et al.   JOURNAL OF BACTERIOLOGY

Evolutionary insights from Erwinia amylovora genomics

(2010) Theo H.M. Smits et al.   JOURNAL OF BIOTECHNOLOGY

Variation in Preference and Performance of Frankliniella occidentalis (Thysanoptera: Thripidae) on Three Strawberry Cultivars

(2010) Touhidur Rahman et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

FASconCAT: Convenient handling of data matrices

(2010) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Complete Genome Sequence of the Fire Blight PathogenErwinia amylovoraCFBP 1430 and Comparison to OtherErwiniaspp.

(2010) Theo H. M. Smits et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

Reordering contigs of draft genomes using the Mauve Aligner

(2009) Anna I. Rissman et al.   BIOINFORMATICS

Host-symbiont co-speciation and reductive genome evolution in gut symbiotic bacteria of acanthosomatid stinkbugs

(2009) Yoshitomo Kikuchi et al.   BMC BIOLOGY

Genotypic comparison of Pantoea agglomerans plant and clinical strains

(2009) Fabio Rezzonico et al.   BMC MICROBIOLOGY

Distribution and Ecology ofFrankliniella occidentalis(Thysanoptera: Thripidae) Bacterial Symbionts

(2009) Lisa J. Chanbusarakum et al.   ENVIRONMENTAL ENTOMOLOGY

Global status of tospovirus epidemics in diverse cropping systems: Successes achieved and challenges ahead

(2009) H.R. Pappu et al.   VIRUS RESEARCH

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Characterization of bacterial symbionts in Frankliniella occidentalis (Pergande), Western flower thrips

(2008) Lisa Chanbusarakum et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

A simple, fast, and accurate method of phylogenomic inference

(2008) Martin Wu et al.   GENOME BIOLOGY