Soil contamination alters the willow root and rhizosphere metatranscriptome and the root–rhizosphere interactome

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria

(2017) Julien Tremblay et al.   ISME Journal

Comparative Transcriptomic Approaches Exploring Contamination Stress Tolerance inSalixsp. Reveal the Importance for a Metaorganismal de Novo Assembly Approach for Nonmodel Plants

(2016) Nicholas J. B. Brereton et al.   PLANT PHYSIOLOGY

Microbes Drive Evolution of Animals and Plants: the Hologenome Concept

(2016) Eugene Rosenberg et al.   mBio

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

(2016) Marcel Huntemann et al.   Standards in Genomic Sciences

The Willow Microbiome Is Influenced by Soil Petroleum-Hydrocarbon Concentration with Plant Compartment-Specific Effects

(2016) Stacie Tardif et al.   Frontiers in Microbiology

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil

(2015) Emmanuel Gonzalez et al.   BMC PLANT BIOLOGY

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill

(2015) Terrence H. Bell et al.   ENVIRONMENTAL MICROBIOLOGY

“Omics” Insights into PAH Degradation toward Improved Green Remediation Biotechnologies

(2015) Abdelhak El Amrani et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genotypic differences explain most of the response of willow cultivars to petroleum-contaminated soil

(2015) Vanessa Grenier et al.   TREES-STRUCTURE AND FUNCTION

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

Transplanting Soil Microbiomes Leads to Lasting Effects on Willow Growth, but not on the Rhizosphere Microbiome

(2015) Etienne Yergeau et al.   Frontiers in Microbiology

Salix purpurea Stimulates the Expression of Specific Bacterial Xenobiotic Degradation Genes in a Soil Contaminated with Hydrocarbons

(2015) Antoine P. Pagé et al.   PLoS One

Contrasting the Community Structure of Arbuscular Mycorrhizal Fungi from Hydrocarbon-Contaminated and Uncontaminated Soils following Willow (Salix spp. L.) Planting

(2014) Saad El-Din Hassan et al.   PLoS One

Increasing phytoremediation efficiency and reliability using novel omics approaches

(2014) Terrence H. Bell et al.   TRENDS IN BIOTECHNOLOGY

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

(2013) Etienne Yergeau et al.   ISME Journal

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Influence of arbuscular mycorrhiza on growth and reproductive response of plants under water deficit: a meta-analysis

(2013) Benjamin Jayne et al.   MYCORRHIZA

Biotic contexts alter metal sequestration and AMF effects on plant growth in soils polluted with heavy metals

(2012) Sydney I. Glassman et al.   ECOLOGY

Sizing up metatranscriptomics

(2012) Mary Ann Moran et al.   ISME Journal

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Rhizosphere chemical dialogues: plant–microbe interactions

(2009) Dayakar V Badri et al.   CURRENT OPINION IN BIOTECHNOLOGY

Influence of chronic ozone stress on carbon translocation pattern into rhizosphere microbial communities of beech trees (Fagus sylvatica L.) during a growing season

(2009) Jürgen Esperschütz et al.   PLANT AND SOIL

Rhizosphere carbon deposition, oxidative stress and nutritional changes in two poplar species exposed to aluminum

(2009) D. Naik et al.   TREE PHYSIOLOGY

Responses of Antarctic soil microbial communities and associated functions to temperature and freeze-thaw cycle frequency

(2008) Etienne Yergeau et al.   ENVIRONMENTAL MICROBIOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

A Rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants

(2008) Giorgio Gambino et al.   PHYTOCHEMICAL ANALYSIS