Transplanting Soil Microbiomes Leads to Lasting Effects on Willow Growth, but not on the Rhizosphere Microbiome

Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill

(2015) Terrence H. Bell et al.   ENVIRONMENTAL MICROBIOLOGY

“Omics” Insights into PAH Degradation toward Improved Green Remediation Biotechnologies

(2015) Abdelhak El Amrani et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

Harnessing phytomicrobiome signaling for rhizosphere microbiome engineering

(2015) Liliana Quiza et al.   Frontiers in Plant Science

Salix purpurea Stimulates the Expression of Specific Bacterial Xenobiotic Degradation Genes in a Soil Contaminated with Hydrocarbons

(2015) Antoine P. Pagé et al.   PLoS One

Increasing phytoremediation efficiency and reliability using novel omics approaches

(2014) Terrence H. Bell et al.   TRENDS IN BIOTECHNOLOGY

Effect of bioaugmentation to enhance phytoremediation for removal of phenanthrene and pyrene from soil with Sorghum and Onobrychis sativa

(2014) Mohammad Baneshi et al.   Journal of Environmental Health Science and Engineering

Decontamination of a polychlorinated biphenyls-contaminated soil by phytoremediation-assisted bioaugmentation

(2013) C. Secher et al.   BIODEGRADATION

De-coupling of root–microbiome associations followed by antagonist inoculation improves rhizosphere soil suppressiveness

(2013) Meihua Qiu et al.   BIOLOGY AND FERTILITY OF SOILS

Alteration of microbial community structure affects diesel biodegradation in an Arctic soil

(2013) Terrence H. Bell et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

(2013) Etienne Yergeau et al.   ISME Journal

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Bacteria with ACC deaminase can promote plant growth and help to feed the world

(2013) Bernard R. Glick   MICROBIOLOGICAL RESEARCH

Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Production of fungal and bacterial growth modulating secondary metabolites is widespread among mycorrhiza-associated streptomycetes

(2012) Silvia D Schrey et al.   BMC MICROBIOLOGY

Relationships between Arabidopsis genotype-specific biomass accumulation and associated soil microbial communities

(2012) Akifumi Sugiyama et al.   Botany

Biotic contexts alter metal sequestration and AMF effects on plant growth in soils polluted with heavy metals

(2012) Sydney I. Glassman et al.   ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Harnessing the rhizosphere microbiome through plant breeding and agricultural management

(2012) Matthew G. Bakker et al.   PLANT AND SOIL

A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming

(2012) Ramona Marasco et al.   PLoS One

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Nitrogen-Incorporating Bacteria in Petroleum-Contaminated Arctic Soils by Using [15N]DNA-Based Stable Isotope Probing and Pyrosequencing

(2011) Terrence H. Bell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Establishment techniques to using willow for phytoremediation on a former oil refinery in southern Quebec: achievements and constraints

(2011) Werther Guidi et al.   CHEMISTRY AND ECOLOGY

The Inoculation Method Affects Colonization and Performance of Bacterial Inoculant Strains in the Phytoremediation of Soil Contaminated with Diesel Oil

(2011) Muhammad Afzal et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Metaorganisms as the new frontier

(2011) Thomas C.G. Bosch et al.   ZOOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

A meta-analysis of context-dependency in plant response to inoculation with mycorrhizal fungi

(2010) Jason D. Hoeksema et al.   ECOLOGY LETTERS

Organic agriculture promotes evenness and natural pest control

(2010) David W. Crowder et al.   NATURE

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

(2010) Justin Kuczynski et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Investigating the mechanisms for the opposing pH relationships of fungal and bacterial growth in soil

(2010) Johannes Rousk et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions

(2009) Paola Bonfante et al.   Annual Review of Microbiology

Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization

(2009) J. Rousk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rhizosphere chemical dialogues: plant–microbe interactions

(2009) Dayakar V Badri et al.   CURRENT OPINION IN BIOTECHNOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Plant and fungal identity determines pathogen protection of plant roots by arbuscular mycorrhizas

(2009) Benjamin A. Sikes et al.   JOURNAL OF ECOLOGY

Plant Growth-Promoting Rhizobacteria Allow Reduced Application Rates of Chemical Fertilizers

(2009) A. O. Adesemoye et al.   MICROBIAL ECOLOGY

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

Nitrifier dominance of Arctic soil nitrous oxide emissions arises due to fungal competition with denitrifiers for nitrate

(2009) Steven D. Siciliano et al.   SOIL BIOLOGY & BIOCHEMISTRY

Examining the fungal and bacterial niche overlap using selective inhibitors in soil

(2008) Johannes Rousk et al.   FEMS MICROBIOLOGY ECOLOGY

Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field

(2008) Anna Kielak et al.   FEMS MICROBIOLOGY ECOLOGY

Arbuscular Mycorrhiza and Petroleum-Degrading Microorganisms Enhance Phytoremediation of Petroleum-Contaminated Soil

(2008) Alejandro Alarcón et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Phytoremediation and rhizoremediation of organic soil contaminants: Potential and challenges

(2008) Karen E. Gerhardt et al.   PLANT SCIENCE

Antagonistic and synergistic effects of fungal and bacterial growth in soil after adding different carbon and nitrogen sources

(2008) Sandra Meidute et al.   SOIL BIOLOGY & BIOCHEMISTRY