Microbial expression profiles in the rhizosphere of willows depend on soil contamination

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

(2013) Thomas R Turner et al.   ISME Journal

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance

(2013) Terrence H Bell et al.   ISME Journal

Next-Generation Sequencing of Microbial Communities in the Athabasca River and Its Tributaries in Relation to Oil Sands Mining Activities

(2012) Etienne Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

(2012) Ben Fan et al.   BMC MICROBIOLOGY

Parvibaculum hydrocarboniclasticum sp. nov., a mesophilic, alkane-oxidizing alphaproteobacterium isolated from a deep-sea hydrothermal vent on the East Pacific Rise

(2012) R. Rosario-Passapera et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Potential of willow and its genetically engineered associated bacteria to remediate mixed Cd and toluene contamination

(2012) Nele Weyens et al.   JOURNAL OF SOILS AND SEDIMENTS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Unraveling plant–microbe interactions: can multi-species transcriptomics help?

(2011) Peer M. Schenk et al.   TRENDS IN BIOTECHNOLOGY

Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

(2011) Vinoy K Ramachandran et al.   GENOME BIOLOGY

Characterization of arsenic-resistant bacteria from the rhizosphere of arsenic hyperaccumulator Pteris vittata

(2010) Anhui Huang et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

(2010) Paul G. Dennis et al.   FEMS MICROBIOLOGY ECOLOGY

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

(2010) Frank J Stewart et al.   ISME Journal

Complete Genome Sequence of the Metabolically Versatile Plant Growth-Promoting Endophyte Variovorax paradoxus S110

(2010) J.-I. Han et al.   JOURNAL OF BACTERIOLOGY

Ectomycorrhiza formation and willow growth promotion as affected by associated bacteria: role of microbial metabolites and use of C sources

(2009) Katarzyna Hrynkiewicz et al.   BIOLOGY AND FERTILITY OF SOILS

Mesorhizobium metallidurans sp. nov., a metal-resistant symbiont of Anthyllis vulneraria growing on metallicolous soil in Languedoc, France

(2009) C. Vidal et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Influence of chronic ozone stress on carbon translocation pattern into rhizosphere microbial communities of beech trees (Fagus sylvatica L.) during a growing season

(2009) Jürgen Esperschütz et al.   PLANT AND SOIL

Rhizosphere carbon deposition, oxidative stress and nutritional changes in two poplar species exposed to aluminum

(2009) D. Naik et al.   TREE PHYSIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates

(2008) S. Henry et al.   ENVIRONMENTAL MICROBIOLOGY

Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field

(2008) Anna Kielak et al.   FEMS MICROBIOLOGY ECOLOGY

ASSOCIATED BACTERIA INCREASE THE PHYTOEXTRACTION OF CADMIUM AND ZINC FROM A METAL-CONTAMINATED SOIL BY MYCORRHIZAL WILLOWS

(2008) Dana Zimmer et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of I.E.3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil

(2008) Timo P Sipilä et al.   ISME Journal

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

The potential of the acetonitrile biodegradation by Mesorhizobium sp. F28

(2008) Yun-Shu Feng et al.   JOURNAL OF HAZARDOUS MATERIALS

Rhizosphere bacteria affect growth and metal uptake of heavy metal accumulating willows

(2008) Melanie Kuffner et al.   PLANT AND SOIL