The mycoparasitic fungus Clonostachys rosea responds with both common and specific gene expression during interspecific interactions with fungal prey

Investigating the compatibility of the biocontrol agent Clonostachys rosea IK726 with prodigiosin-producing Serratia rubidaea S55 and phenazine-producing Pseudomonas chlororaphis ToZa7

(2016) Nathalie N. Kamou et al.   ARCHIVES OF MICROBIOLOGY

Isolation of Secondary Metabolites from the Soil-Derived Fungus Clonostachys rosea YRS-06, a Biological Control Agent, and Evaluation of Antibacterial Activity

(2016) Ming-Ming Zhai et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Multilocus phylogeny of Clonostachys subgenus Bionectria from Brazil and description of Clonostachys chloroleuca sp. nov.

(2016) Gláucia M. Moreira et al.   MYCOLOGICAL PROGRESS

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Small genome of the fungusEscovopsis weberi, a specialized disease agent of ant agriculture

(2016) Tom J. B. de Man et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

(2016) C. Alisha Quandt et al.   G3-Genes Genomes Genetics

Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea

(2015) Magnus Karlsson et al.   Genome Biology and Evolution

Identifying glycoside hydrolase family 18 genes in the mycoparasitic fungal species Clonostachys rosea

(2015) Georgios Tzelepis et al.   MICROBIOLOGY-SGM

The ABC transporter ABCG29 is involved in H2O2 tolerance and biocontrol traits in the fungus Clonostachys rosea

(2015) Mukesh Dubey et al.   MOLECULAR GENETICS AND GENOMICS

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Reprogramming of the Mycoparasitic FungusAmpelomyces quisqualisDuring the Powdery Mildew Host-Induced Germination

(2015) Stefanos Siozios et al.   PHYTOPATHOLOGY

Identification of mycoparasitism-related genes in Clonostachys rosea 67-1 active against Sclerotinia sclerotiorum

(2015) Zhan-Bin Sun et al.   Scientific Reports

Identification of mycoparasitism-related genes against the phytopathogen Sclerotinia sclerotiorum through transcriptome and expression profile analysis in Trichoderma harzianum

(2014) Andrei Steindorff et al.   BMC GENOMICS

Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea

(2014) Chatchai Kosawang et al.   BMC GENOMICS

Zearalenone detoxification by zearalenone hydrolase is important for the antagonistic ability of Clonostachys rosea against mycotoxigenic Fusarium graminearum

(2014) Chatchai Kosawang et al.   Fungal Biology

Functional analysis of the C-II subgroup killer toxin-like chitinases in the filamentous ascomycete Aspergillus nidulans

(2014) Georgios D. Tzelepis et al.   FUNGAL GENETICS AND BIOLOGY

An ATP-Binding Cassette Pleiotropic Drug Transporter Protein Is Required for Xenobiotic Tolerance and Antagonism in the Fungal Biocontrol Agent Clonostachys rosea

(2014) Mukesh K. Dubey et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Identification of differentially expressed genes from Trichoderma harzianum during growth on cell wall of Fusarium solani as a tool for biotechnological application

(2013) Pabline Marinho Vieira et al.   BMC GENOMICS

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism

(2013) Lea Atanasova et al.   BMC GENOMICS

The Polyketide Synthase Gene pks4 of Trichoderma reesei Provides Pigmentation and Stress Resistance

(2013) Lea Atanasova et al.   EUKARYOTIC CELL

The glyoxylate cycle is involved in pleotropic phenotypes, antagonism and induction of plant defence responses in the fungal biocontrol agent Trichoderma atroviride

(2013) Mukesh K. Dubey et al.   FUNGAL GENETICS AND BIOLOGY

Role of the methylcitrate cycle in growth, antagonism and induction of systemic defence responses in the fungal biocontrol agent Trichoderma atroviride

(2013) M. K. Dubey et al.   MICROBIOLOGY-SGM

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Suppression of clubroot byClonostachys roseavia antibiosis and induced host resistance

(2013) R. Lahlali et al.   PLANT PATHOLOGY

Trichoderma harzianum expressed sequence tags for identification of genes with putative roles in mycoparasitism against Fusarium solani

(2012) Andrei Stecca Steindorff et al.   BIOLOGICAL CONTROL

Isolation and functional analysis of Thmfs1, the first major facilitator superfamily transporter from the biocontrol fungus Trichoderma harzianum

(2012) Mu Liu et al.   BIOTECHNOLOGY LETTERS

Functional analysis of glycoside hydrolase family 18 and 20 genes in Neurospora crassa

(2012) Georgios D. Tzelepis et al.   FUNGAL GENETICS AND BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Disruption of the Eng18B ENGase Gene in the Fungal Biocontrol Agent Trichoderma atroviride Affects Growth, Conidiation and Antagonistic Ability

(2012) Mukesh K. Dubey et al.   PLoS One

Differential Regulation of Orthologous Chitinase Genes in Mycoparasitic Trichoderma Species

(2011) Sabine Gruber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lack of evidence for a role of hydrophobins in conferring surface hydrophobicity to conidia and hyphae of Botrytis cinerea

(2011) Andreas Mosbach et al.   BMC MICROBIOLOGY

The oomycete Pythium oligandrum expresses putative effectors during mycoparasitism of Phytophthora infestans and is amenable to transformation

(2011) Neil R. Horner et al.   Fungal Biology

Clonostachys rosea BAFC3874 as a Sclerotinia sclerotiorum antagonist: mechanisms involved and potential as a biocontrol agent

(2011) M.A. Rodríguez et al.   JOURNAL OF APPLIED MICROBIOLOGY

Trichoderma: the genomics of opportunistic success

(2011) Irina S. Druzhinina et al.   NATURE REVIEWS MICROBIOLOGY

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

Phylogenetic analysis of fungal ABC transporters

(2010) Andriy Kovalchuk et al.   BMC GENOMICS

Biological control of fusarium head blight of wheat withClonostachys roseastrain ACM941

(2010) A.G. Hue et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Functional analysis of the fungal/plant class chitinase family in Aspergillus fumigatus

(2010) Laura Alcazar-Fuoli et al.   FUNGAL GENETICS AND BIOLOGY

Analysis of subgroup C of fungal chitinases containing chitin-binding and LysM modules in the mycoparasite Trichoderma atroviride

(2010) Sabine Gruber et al.   GLYCOBIOLOGY

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey

(2009) Verena Seidl et al.   BMC GENOMICS

Chitinase and β-1,3-glucanase enzyme production by the mycoparasite Clonostachys rosea f. catenulata against fungal plant pathogens

(2009) Syama Chatterton et al.   CANADIAN JOURNAL OF MICROBIOLOGY

The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion

(2009) Jeffrey J. Coleman et al.   PLoS Genetics

Three endochitinase-encoding genes identified in the biocontrol fungus Clonostachys rosea are differentially expressed

(2008) Mojtaba Mamarabadi et al.   CURRENT GENETICS

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Growth on nitrate and occurrence of nitrate reductase-encoding genes in a phylogenetically diverse range of ectomycorrhizal fungi

(2008) Cajsa M. R. Nygren et al.   NEW PHYTOLOGIST

Induction of PR proteins and resistance by the biocontrol agent Clonostachys rosea in wheat plants infected with Fusarium culmorum

(2008) Roberta Roberti et al.   PLANT SCIENCE