Metal contaminations impact archaeal community composition, abundance and function in remote alpine lakes

Abundance and Co-Distribution of Widespread Marine Archaeal Lineages in Surface Sediments of Freshwater Water Bodies across the Iberian Peninsula

(2017) Sergi Compte-Port et al.   MICROBIAL ECOLOGY

Change of methane production pathway with sediment depth in a lake on the Tibetan plateau

(2017) Yongqin Liu et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Historical trends of anthropogenic metals in Eastern Tibetan Plateau as reconstructed from alpine lake sediments over the last century

(2016) Haijian Bing et al.   CHEMOSPHERE

Diversity, abundance and community structure of ammonia-oxidizing archaea and bacteria in riparian sediment of Zhenjiang ancient canal

(2016) Xiaohong Zhou et al.   ECOLOGICAL ENGINEERING

Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments

(2016) Cassandre Sara Lazar et al.   ENVIRONMENTAL MICROBIOLOGY

Early atmospheric metal pollution provides evidence for Chalcolithic/Bronze Age mining and metallurgy in Southwestern Europe

(2016) Antonio Martínez Cortizas et al.   SCIENCE OF THE TOTAL ENVIRONMENT

High occurrence of Pacearchaeota and Woesearchaeota (Archaea superphylum DPANN) in the surface waters of oligotrophic high-altitude lakes

(2016) Rudiger Ortiz-Alvarez et al.   Environmental Microbiology Reports

The Vertical Distribution of Sediment Archaeal Community in the “Black Bloom” Disturbing Zhushan Bay of Lake Taihu

(2016) Xianfang Fan et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

The Distribution Pattern of Sediment Archaea Community of the Poyang Lake, the Largest Freshwater Lake in China

(2016) Yantian Ma et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Temporal and Spatial Dynamics of Archaeal Communities in Two Freshwater Lakes at Different Trophic Status

(2016) Yuyin Yang et al.   Frontiers in Microbiology

Bacterial and archaeal communities in the deep-sea sediments of inactive hydrothermal vents in the Southwest India Ridge

(2016) Likui Zhang et al.   Scientific Reports

High concentrations of bioavailable heavy metals impact freshwater sediment microbial communities

(2015) Caiying Ni et al.   ANNALS OF MICROBIOLOGY

Iron and iron-binding ligands as cofactors that limit cyanobacterial biomass across a lake trophic gradient

(2015) Ryan J. Sorichetti et al.   FRESHWATER BIOLOGY

Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage

(2015) Mireia Fillol et al.   ISME Journal

Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat

(2015) Xueju Lin et al.   ISME Journal

entropart: AnRPackage to Measure and Partition Diversity

(2015) Eric Marcon et al.   Journal of Statistical Software

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

An integrated insight into the response of sedimentary microbial communities to heavy metal contamination

(2015) Huaqun Yin et al.   Scientific Reports

Metagenome of a Microbial Community Inhabiting a Metal-Rich Tropical Stream Sediment

(2015) Patrícia S. Costa et al.   PLoS One

Syntrophs Dominate Sequences Associated with the Mercury Methylation-Related GenehgcAin the Water Conservation Areas of the Florida Everglades

(2014) Hee-Sung Bae et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Depth-related changes of sediment ammonia-oxidizing microorganisms in a high-altitude freshwater wetland

(2014) Yong Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes

(2014) Jingxu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

(2014) Guillaume Borrel et al.   BMC GENOMICS

Taxonomic database and cut-off value for processing mcrA gene 454 pyrosequencing data by MOTHUR

(2014) Sizhong Yang et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Assessment of the potential for copper limitation of ammonia oxidation by Archaea in a dynamic estuary

(2014) Jeremy E. Jacquot et al.   MARINE CHEMISTRY

Evidence of Novel Phylogenetic Lineages of Methanogenic Archaea from Hypersaline Microbial Mats

(2014) José Q. García-Maldonado et al.   MICROBIAL ECOLOGY

Identification of key components in the energy metabolism of the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus by transcriptome analyses

(2014) William P. Hocking et al.   Frontiers in Microbiology

Microbial Contributions to Phosphorus Cycling in Eutrophic Lakes and Wastewater

(2013) Katherine D. McMahon et al.   Annual Review of Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient

(2013) Louise A. O'Sullivan et al.   FEMS MICROBIOLOGY ECOLOGY

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Spatial risk assessment and sources identification of heavy metals in surface sediments from the Dongting Lake, Middle China

(2013) Fei Li et al.   JOURNAL OF GEOCHEMICAL EXPLORATION

Abundance, Activity, and Diversity of Archaeal and Bacterial Communities in Both Uncontaminated and Highly Copper-Contaminated Marine Sediments

(2013) Ludovic Besaury et al.   MARINE BIOTECHNOLOGY

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Methyl coenzyme M reductase (mcrA) gene abundance correlates with activity measurements of methanogenic H2/CO2-enriched anaerobic biomass

(2013) Rachel Morris et al.   Microbial Biotechnology

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial indicators of soil health as tools for ecological risk assessment of a metal contaminated site in Brazil

(2012) Júlia Carina Niemeyer et al.   APPLIED SOIL ECOLOGY

Partitioning ofThaumarchaeotapopulations along environmental gradients in high mountain lakes

(2012) Jean-Christophe Auguet et al.   FEMS MICROBIOLOGY ECOLOGY

Combining limnological and palaeolimnological data to disentangle the effects of nutrient pollution and climate change on lake ecosystems: problems and potential

(2012) R. W. BATTARBEE et al.   FRESHWATER BIOLOGY

Whole-catchment inventories of trace metals in soils and sediments in mountain lake catchments in the Central Pyrenees: Apportioning the anthropogenic and natural contributions

(2012) Montserrat Bacardit et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake

(2012) Jean-Christophe Auguet et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Stratification of Archaea in the Deep Sediments of a Freshwater Meromictic Lake: Vertical Shift from Methanogenic to Uncultured Archaeal Lineages

(2012) Guillaume Borrel et al.   PLoS One

Sedimentary records of metal deposition in Japanese alpine lakes for the last 250years: Recent enrichment of airborne Sb and In in East Asia

(2012) Michinobu Kuwae et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Seasonal Changes of Freshwater Ammonia-Oxidizing Archaeal Assemblages and Nitrogen Species in Oligotrophic Alpine Lakes

(2011) Jean-Christophe Auguet et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Historical trends of heavy metal contamination and their sources in lacustrine sediment from Xijiu Lake, Taihu Lake Catchment, China

(2011) Haijian Bing et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Lakes and reservoirs as sentinels, integrators, and regulators of climate change

(2011) Craig E. Williamson et al.   LIMNOLOGY AND OCEANOGRAPHY

Lakes and reservoirs as regulators of carbon cycling and climate

(2011) Lars J. Tranvik et al.   LIMNOLOGY AND OCEANOGRAPHY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Major and trace elements in soils in the Central Pyrenees: high altitude soils as a cumulative record of background atmospheric contamination over SW Europe

(2010) Montserrat Bacardit et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Community structures of ammonia-oxidising archaea and bacteria in high-altitude lakes on the Tibetan Plateau

(2010) ANYI HU et al.   FRESHWATER BIOLOGY

Microbial community structures in anoxic freshwater lake sediment along a metal contamination gradient

(2010) Heidi L Gough et al.   ISME Journal

(Pre-) historic changes in natural and anthropogenic heavy metals deposition inferred from two contrasting Swiss Alpine lakes

(2010) Florian Thevenon et al.   QUATERNARY SCIENCE REVIEWS

Composition of bacterial and archaeal communities in freshwater sediments with different contamination levels (Lake Geneva, Switzerland)

(2010) Laurence Haller et al.   WATER RESEARCH

A New Phylogenetic Diversity Measure Generalizing the Shannon Index and Its Application to Phyllostomid Bats

(2009) Benjamin Allen et al.   AMERICAN NATURALIST

Correlation of Methane Production and Functional Gene Transcriptional Activity in a Peat Soil

(2009) T. E. Freitag et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Vertical structure of archaeal communities and the distribution of ammonia monooxygenase A gene variants in two meromictic High Arctic lakes

(2009) Jérémie Pouliot et al.   ENVIRONMENTAL MICROBIOLOGY

Response of Archaeal Community Structure to Environmental Changes in Lakes on the Tibetan Plateau, Northwestern China

(2009) Hongchen Jiang et al.   GEOMICROBIOLOGY JOURNAL

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultrasound energy focused in a glass probe: An approach to the simultaneous and fast extraction of trace elements from sediments

(2009) Silvia Fdez-Ortiz de Vallejuelo et al.   TALANTA

Abundance and Activity of Methanotrophic Bacteria in Littoral and Profundal Sediments of Lake Constance (Germany)

(2008) M. Rahalkar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A hotspot for cold crenarchaeota in the neuston of high mountain lakes

(2008) Jean-Christophe Auguet et al.   ENVIRONMENTAL MICROBIOLOGY

On the Phosphorus Limitation Paradigm for Lakes

(2008) Robert W. Sterner   INTERNATIONAL REVIEW OF HYDROBIOLOGY

Molecular Studies on the Microbial Diversity Associated with Mining-Impacted Coeur d’Alene River Sediments

(2008) Gurdeep Rastogi et al.   MICROBIAL ECOLOGY