High concentrations of bioavailable heavy metals impact freshwater sediment microbial communities

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

16S rDNA Pyrosequencing Analysis of Bacterial Community in Heavy Metals Polluted Soils

(2014) Marcin Gołębiewski et al.   MICROBIAL ECOLOGY

Rhizosphere microbial community and Zn uptake by willow (Salix purpurea L.) depend on soil sulfur concentrations in metalliferous peat soils

(2013) Tarah S. Sullivan et al.   APPLIED SOIL ECOLOGY

Microbial formation of palladium nanoparticles by Geobacter sulfurreducens for chromate reduction

(2013) Ya Tuo et al.   BIORESOURCE TECHNOLOGY

The prokaryotic community of a historically mining-impacted tropical stream sediment is as diverse as that from a pristine stream sediment

(2013) Mariana P. Reis et al.   EXTREMOPHILES

Functional gene array-based analysis of microbial communities in heavy metals-contaminated lake sediments

(2013) Sanghoon Kang et al.   FEMS MICROBIOLOGY ECOLOGY

Abundance, Activity, and Diversity of Archaeal and Bacterial Communities in Both Uncontaminated and Highly Copper-Contaminated Marine Sediments

(2013) Ludovic Besaury et al.   MARINE BIOTECHNOLOGY

Soil bacterial and archaeal community composition reflects high spatial heterogeneity of pH, bioavailable Zn, and Cu in a metalliferous peat soil

(2013) Tarah S. Sullivan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Diversity and vertical distributions of sediment bacteria in an urban river contaminated by nutrients and heavy metals

(2013) Xunan Yang et al.   Frontiers of Environmental Science & Engineering

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structure analysis of bacterial community and their heavy-metal resistance determinants in the heavy-metal-contaminated soil sample

(2012) Jana Harichová et al.   BIOLOGIA

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Comparison of commercial kits for the extraction of DNA from paddy soils

(2012) S. Knauth et al.   LETTERS IN APPLIED MICROBIOLOGY

Culture-Dependent and Independent Studies of Microbial Diversity in Highly Copper-Contaminated Chilean Marine Sediments

(2012) Ludovic Besaury et al.   MICROBIAL ECOLOGY

Microbial Reduction of Chromate in the Presence of Nitrate by Three Nitrate Respiring Organisms

(2012) Peter Chovanec et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Comparison of commercial DNA extraction kits for isolation and purification of bacterial and eukaryotic DNA from PAH-contaminated soils

(2011) Nagissa Mahmoudi et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Interactions between Zn and bacteria in marine tropical coastal sediments

(2011) Olivier Pringault et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Microbial community composition in sediments resists perturbation by nutrient enrichment

(2011) Jennifer L Bowen et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Bacterial communities associated with the rhizosphere of pioneer plants (Bahia xylopoda and Viguiera linearis) growing on heavy metals-contaminated soils

(2010) Yendi E. Navarro-Noya et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

High Abundance of Ammonia-Oxidizing Archaea in Coastal Waters, Determined Using a Modified DNA Extraction Method

(2010) H. Urakawa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation and Physiology of Bacteria from Contaminated Subsurface Sediments

(2010) A. Bollmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community structures in anoxic freshwater lake sediment along a metal contamination gradient

(2010) Heidi L Gough et al.   ISME Journal

Inputting history of heavy metals into the inland lake recorded in sediment profiles: Poyang Lake in China

(2010) Guo-Li Yuan et al.   JOURNAL OF HAZARDOUS MATERIALS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Composition of bacterial and archaeal communities in freshwater sediments with different contamination levels (Lake Geneva, Switzerland)

(2010) Laurence Haller et al.   WATER RESEARCH

The seasonal structure of microbial communities in the Western English Channel

(2009) Jack A. Gilbert et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial and archaeal assemblages in sediments of a large shallow freshwater lake, Lake Taihu, as revealed by denaturing gradient gel electrophoresis

(2009) F.H. Liu et al.   JOURNAL OF APPLIED MICROBIOLOGY

Circumpolar synchrony in big river bacterioplankton

(2009) Byron C. Crump et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impact of increasing heavy metal stress on the diversity and structure of the bacterial and actinobacterial communities of metallophytic grassland soil

(2008) Lisa Bamborough et al.   BIOLOGY AND FERTILITY OF SOILS

Study of heavy metal speciation in branch sediments of Poyang Lake

(2008) Mingbiao LUO et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA