High occurrence of Pacearchaeota and Woesearchaeota (Archaea superphylum DPANN) in the surface waters of oligotrophic high-altitude lakes

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage

(2015) Mireia Fillol et al.   ISME Journal

The two-domain tree of life is linked to a new root for the Archaea

(2015) Kasie Raymann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal dynamics of activeArchaeain oxygen-depleted zones of two deep lakes

(2015) Mylène Hugoni et al.   Environmental Microbiology Reports

Diversity of Methane-Cycling Archaea in Hydrothermal Sediment Investigated by General and Group-Specific PCR Primers

(2014) Mark A. Lever et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria

(2014) Albert Barberán et al.   ECOLOGY LETTERS

Archaeal “Dark Matter” and the Origin of Eukaryotes

(2014) Tom A. Williams et al.   Genome Biology and Evolution

A phylogenetic perspective on species diversity, β-diversity and biogeography for the microbial world

(2014) Albert Barberán et al.   MOLECULAR ECOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Targeting spatiotemporal dynamics of planktonic SAGMGC-1 and segregation of ammonia-oxidizing thaumarchaeota ecotypes by newly designed primers and quantitative polymerase chain reaction

(2013) Claudia X. Restrepo-Ortiz et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial biodiversity in saline shallow lakes of the Monegros Desert, Spain

(2013) Emilio O. Casamayor et al.   FEMS MICROBIOLOGY ECOLOGY

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Environmental distribution of two widespread uncultured freshwater Euryarchaeota clades unveiled by specific primers and quantitative PCR

(2013) Claudia X. Restrepo-Ortiz et al.   Environmental Microbiology Reports

Temporal and Spatial Coexistence of Archaeal and BacterialamoAGenes and Gene Transcripts in Lake Lucerne

(2013) Elisabeth W. Vissers et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Partitioning ofThaumarchaeotapopulations along environmental gradients in high mountain lakes

(2012) Jean-Christophe Auguet et al.   FEMS MICROBIOLOGY ECOLOGY

Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake

(2012) Jean-Christophe Auguet et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Habitat-Associated Phylogenetic Community Patterns of Microbial Ammonia Oxidizers

(2012) Antoni Fernàndez-Guerra et al.   PLoS One

Anaerobic treatment of municipal wastewater at ambient temperature: Analysis of archaeal community structure and recovery of dissolved methane

(2012) Wasala M.K.R.T.W. Bandara et al.   WATER RESEARCH

Atmospheric phosphorus deposition may cause lakes to revert from phosphorus limitation back to nitrogen limitation

(2012) L. Camarero et al.   Nature Communications

Archaea in Symbioses

(2012) Christoph Wrede et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages

(2012) Alan M. Durbin et al.   Frontiers in Microbiology

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

Phylogeny and evolution of the Archaea: one hundred genomes later

(2011) Celine Brochier-Armanet et al.   CURRENT OPINION IN MICROBIOLOGY

Differential photoinhibition of bacterial and archaeal ammonia oxidation

(2011) Stephanie N. Merbt et al.   FEMS MICROBIOLOGY LETTERS

Archaea in Yellowstone Lake

(2011) Jinjun Kan et al.   ISME Journal

Microbial Diversity of an Anoxic Zone of a Hydroelectric Power Station Reservoir in Brazilian Amazonia

(2011) Diego A. Graças et al.   MICROBIAL ECOLOGY

Diversity and Spatial Distribution of Prokaryotic Communities Along A Sediment Vertical Profile of A Deep-Sea Mud Volcano

(2011) Maria G. Pachiadaki et al.   MICROBIAL ECOLOGY

Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota

(2011) ALBERT BARBERÁN et al.   MOLECULAR ECOLOGY

The archaeal ‘TACK’ superphylum and the origin of eukaryotes

(2011) Lionel Guy et al.   TRENDS IN MICROBIOLOGY

Vertical Distribution of Ammonia-Oxidizing Crenarchaeota and Methanogens in the Epipelagic Waters of Lake Kivu (Rwanda-Democratic Republic of the Congo)

(2010) M. Lliros et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Inter-annual recurrence of archaeal assemblages in the coastal NW Mediterranean Sea (Blanes Bay Microbial Observatory)

(2010) Pierre E. Galand et al.   LIMNOLOGY AND OCEANOGRAPHY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Vertical structure of archaeal communities and the distribution of ammonia monooxygenase A gene variants in two meromictic High Arctic lakes

(2009) Jérémie Pouliot et al.   ENVIRONMENTAL MICROBIOLOGY

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Diversity and Stratification of Archaea in a Hypersaline Microbial Mat

(2008) C. E. Robertson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High similarity between bacterioneuston and airborne bacterial community compositions in a high mountain lake area

(2008) Anna Hervas et al.   FEMS MICROBIOLOGY ECOLOGY