Environmental filtering and phylogenetic clustering correlate with the distribution patterns of cryptic protist species

Trophic ecology of a deep-sea fish assemblage in the Northwest Atlantic

(2017) Camilla Parzanini et al.   MARINE BIOLOGY

Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology

(2017) Daniel H. Janzen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

(2017) Frédéric Mahé et al.   Nature Ecology & Evolution

Stimulation of bacteria and protists in rhizosphere of glyphosate-treated barley

(2016) Valentina Imparato et al.   APPLIED SOIL ECOLOGY

Phylogenetic reconstruction based onCOIreshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes

(2016) Anush Kosakyan et al.   CLADISTICS

Ecological and evolutionary significance of novel protist lineages

(2016) Javier del Campo et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Relative importance of local habitat complexity and regional factors for assemblages of oribatid mites (Acari: Oribatida) in Sphagnum peat bogs

(2016) M. A. Minor et al.   EXPERIMENTAL AND APPLIED ACAROLOGY

High-throughput sequencing reveals diverse oomycete communities in oligotrophic peat bog micro-habitat

(2016) David Singer et al.   Fungal Ecology

Water-energy balance, past ecological perturbations and evolutionary constraints shape the latitudinal diversity gradient of soil testate amoebae in south-western South America

(2016) Leonardo D. Fernández et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Protistan community analysis: key findings of a large-scale molecular sampling

(2016) Lars Grossmann et al.   ISME Journal

Dicranochaete– an enigmatic green alga with surprising adaptive capabilities

(2016) Lenka Caisová   PHYCOLOGIA

Environmental DNA COI barcoding for quantitative analysis of protists communities: A test using the Nebela collaris complex (Amoebozoa; Arcellinida; Hyalospheniidae)

(2015) Anush Kosakyan et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Eight species in the Nebela collaris complex: Nebela gimlii (Arcellinida, Hyalospheniidae), a new species described from a Swiss raised bog

(2015) David Singer et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Metatranscriptomic census of active protists in soils

(2015) Stefan Geisen et al.   ISME Journal

Soil microorganisms behave like macroscopic organisms: patterns in the global distribution of soil euglyphid testate amoebae

(2015) Enrique Lara et al.   JOURNAL OF BIOGEOGRAPHY

Testate Amoebae Like It Hot: Species Richness Decreases Along a Subalpine-Alpine Altitudinal Gradient in Both Natural Calluna vulgaris Litter and Transplanted Minuartia sedoides Cushions

(2015) T. J. Heger et al.   MICROBIAL ECOLOGY

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Influences of ecology and biogeography on shaping the distributions of cryptic species: three bat tales in Iberia

(2014) Helena Santos et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Plant functional diversity drives niche-size-structure of dominant microbial consumers along a poor to extremely rich fen gradient

(2014) Vincent E. J. Jassey et al.   JOURNAL OF ECOLOGY

Darwin's finches and their diet niches: the sympatric coexistence of imperfect generalists

(2014) L. F. De León et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

What can modern statistical tools do for limnology?

(2014) Andrew P. Beckerman   JOURNAL OF LIMNOLOGY

Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

(2014) Guillaume Lentendu et al.   MOLECULAR ECOLOGY

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Big answers from small worlds: a user's guide for protist microcosms as a model system in ecology and evolution

(2014) Florian Altermatt et al.   Methods in Ecology and Evolution

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Cryptic species in Pagamea coriacea sensu lato (Rubiaceae): evidence from morphology, ecology and reproductive behavior in a sympatric context

(2013) Samantha de Miranda Esteves et al.   ACTA AMAZONICA

Trait divergence and indirect interactions allow facilitation of congeneric species

(2012) Elisa Beltrán et al.   ANNALS OF BOTANY

Using DNA-barcoding for sorting out protist species complexes: A case study of the Nebela tincta–collaris–bohemica group (Amoebozoa; Arcellinida, Hyalospheniidae)

(2012) Anush Kosakyan et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Vertical niche partitioning between cryptic sibling species of a cosmopolitan marine planktonic protist

(2012) AGNES WEINER et al.   MOLECULAR ECOLOGY

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Island, archipelago and taxon effects: mixed models as a means of dealing with the imperfect design of nature's experiments

(2011) Nils Bunnefeld et al.   ECOGRAPHY

Nestedness patterns and the dual nature of community reassembly in California streams: a multivariate permutation-based approach

(2011) Mark Novak et al.   GLOBAL CHANGE BIOLOGY

Environmental control and spatial structures in peatland vegetation

(2011) R. Andersen et al.   JOURNAL OF VEGETATION SCIENCE

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

COI Barcoding of Nebelid Testate Amoebae (Amoebozoa: Arcellinida): Extensive Cryptic Diversity and Redefinition of the Hyalospheniidae Schultze

(2011) Anush Kosakyan et al.   PROTIST

Reconstructing peatland water tables using transfer functions for plant macrofossils and testate amoebae: A methodological comparison

(2011) M. Väliranta et al.   QUATERNARY INTERNATIONAL

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Null model analysis of species associations using abundance data

(2010) Werner Ulrich et al.   ECOLOGY

Niche conservatism as an emerging principle in ecology and conservation biology

(2010) John J. Wiens et al.   ECOLOGY LETTERS

The Bryosphere: An Integral and Influential Component of the Earth’s Biosphere

(2010) Zoë Lindo et al.   ECOSYSTEMS

Community development along a proglacial chronosequence: are above-ground and below-ground community structure controlled more by biotic than abiotic factors?

(2010) Matthew L. Carlson et al.   JOURNAL OF ECOLOGY

Ephemeroptera, Plecoptera, and Trichoptera fauna of Churchill (Manitoba, Canada): insights into biodiversity patterns from DNA barcoding

(2010) Xin Zhou et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Speciation along a depth gradient in a marine adaptive radiation

(2010) Travis Ingram   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

(2008) Jonathan B. Losos   ECOLOGY LETTERS

Molecular evidence for broad-scale distributions in bdelloid rotifers: everything is not everywhere but most things are very widespread

(2008) DIEGO FONTANETO et al.   MOLECULAR ECOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION

Species richness in boreal swamp forests of SE Norway: The role of surface microtopography

(2007) Rune H. Økland et al.   JOURNAL OF VEGETATION SCIENCE