Approaches to identify and characterize microProteins and their potential uses in biotechnology

At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato

(2018) Norbert Bollier et al.   PLANT CELL

Synthetic MicroProteins: Versatile Tools for Posttranslational Regulation of Target Proteins

(2018) Ulla Dolde et al.   PLANT PHYSIOLOGY

Monitoring proteolytic processing events by quantitative mass spectrometry

(2017) Mariel Coradin et al.   Expert Review of Proteomics

Cross-Species Genome-Wide Identification of Evolutionary Conserved MicroProteins

(2017) Daniel Straub et al.   Genome Biology and Evolution

Regulation of DNA repair pathway choice in S and G2 phases by the NHEJ inhibitor CYREN

(2017) Nausica Arnoult et al.   NATURE

Quantitative proteomics in plant protease substrate identification

(2017) Fatih Demir et al.   NEW PHYTOLOGIST

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

(2017) Runxuan Zhang et al.   NUCLEIC ACIDS RESEARCH

A human microprotein that interacts with the mRNA decapping complex

(2016) Nadia G D'Lima et al.   Nature Chemical Biology

pKAMA-ITACHI Vectors for Highly Efficient CRISPR/Cas9-Mediated Gene Knockout inArabidopsis thaliana

(2016) Hiroki Tsutsui et al.   PLANT AND CELL PHYSIOLOGY

New Peptides Under the s(ORF)ace of the Genome

(2016) Jose I. Pueyo et al.   TRENDS IN BIOCHEMICAL SCIENCES

MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis

(2016) Moritz Graeff et al.   PLoS Genetics

Cytoplasmic translocation, aggregation and cleavage of TDP-43 by enteroviral proteases modulate viral pathogenesis

(2015) G Fung et al.   CELL DEATH AND DIFFERENTIATION

sORFs.org: a repository of small ORFs identified by ribosome profiling

(2015) Volodimir Olexiouk et al.   NUCLEIC ACIDS RESEARCH

MicroProteins: small size – big impact

(2015) Tenai Eguen et al.   TRENDS IN PLANT SCIENCE

Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor

(2014) Sandra K. Floyd et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Ribosome profiling: new views of translation, from single codons to genome scale

(2014) Nicholas T. Ingolia   NATURE REVIEWS GENETICS

Paired-End Analysis of Transcription Start Sites inArabidopsisReveals Plant-Specific Promoter Signatures

(2014) Taj Morton et al.   PLANT CELL

The new frontier of genome engineering with CRISPR-Cas9

(2014) J. A. Doudna et al.   SCIENCE

Small open reading frames associated with morphogenesis are hidden in plant genomes

(2013) K. Hanada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing

(2012) Mainul Hoque et al.   NATURE METHODS

Targeted inactivation of transcription factors by overexpression of their truncated forms in plants

(2012) Pil Joon Seo et al.   PLANT JOURNAL

Cleavage of serum response factor mediated by enteroviral protease 2A contributes to impaired cardiac function

(2011) Jerry Wong et al.   CELL RESEARCH

TAL Effectors: Customizable Proteins for DNA Targeting

(2011) A. J. Bogdanove et al.   SCIENCE

Regulation of protein function by ‘microProteins’

(2010) Annica-Carolin Staudt et al.   EMBO REPORTS

Nuclear Import and DNA Binding of the ZHD5 Transcription Factor Is Modulated by a Competitive Peptide Inhibitor inArabidopsis

(2010) Shin-Young Hong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome editing with engineered zinc finger nucleases

(2010) Fyodor D. Urnov et al.   NATURE REVIEWS GENETICS

Tapping RNA silencing pathways for plant biotechnology

(2010) Alessandra Frizzi et al.   PLANT BIOTECHNOLOGY JOURNAL

MS-driven protease substrate degradomics

(2010) Francis Impens et al.   PROTEOMICS

Global Mapping of the Topography and Magnitude of Proteolytic Events in Apoptosis

(2008) Melissa M. Dix et al.   CELL

Phylogenetic Analysis of the Plant-specificZinc Finger-HomeoboxandMini Zinc FingerGene Families

(2008) Wei Hu et al.   Journal of Integrative Plant Biology

HD-ZIP III Activity Is Modulated by Competitive Inhibitors via a Feedback Loop in Arabidopsis Shoot Apical Meristem Development

(2008) Y.-S. Kim et al.   PLANT CELL