Parallel evolution of storage roots in morning glories (Convolvulaceae)

The ImageJ ecosystem: An open platform for biomedical image analysis

(2015) Johannes Schindelin et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

Widespread flower color convergence in Solanaceae via alternate biochemical pathways

(2015) Julienne Ng et al.   NEW PHYTOLOGIST

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Root Starch Reserves Are Necessary for Vigorous Re-Growth following Cutting Back in Lotus japonicus

(2014) Cécile Vriet et al.   PLoS One

Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences

(2013) Lauren A. Eserman et al.   AMERICAN JOURNAL OF BOTANY

Starch biosynthesis, its regulation and biotechnological approaches to improve crop yields

(2013) Abdellatif Bahaji et al.   BIOTECHNOLOGY ADVANCES

Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation

(2013) Nurit Firon et al.   BMC GENOMICS

WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation

(2013) J. P. Etchells et al.   DEVELOPMENT

Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model

(2012) Papapit Ingkasuwan et al.   BMC Systems Biology

Down-regulation of theIbEXP1gene enhanced storage root development in sweetpotato

(2012) Seol Ah Noh et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]

(2012) Xiang Tao et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

A large-scale intervention to introduce orange sweet potato in rural Mozambique increases vitamin A intakes among children and women

(2011) Christine Hotz et al.   BRITISH JOURNAL OF NUTRITION

What is parallelism?

(2011) Robert W. Scotland   EVOLUTION & DEVELOPMENT

Starch determination, amylose content and susceptibility to in vitro amylolysis in flours from the roots of 25 cassava varieties

(2011) Luisa Elena Mejía-Agüero et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

WOX4Imparts Auxin Responsiveness to Cambium Cells inArabidopsis

(2011) Stefanie Suer et al.   PLANT CELL

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees

(2011) Kevin Liu et al.   SYSTEMATIC BIOLOGY

JACKDAW controls epidermal patterning in the Arabidopsis root meristem through a non-cell-autonomous mechanism

(2010) H. Hassan et al.   DEVELOPMENT

Characterisation of sweetpotato from Papua New Guinea and Australia: Physicochemical, pasting and gelatinisation properties

(2010) Joel G. Waramboi et al.   FOOD CHEMISTRY

SRD1 is involved in the auxin-mediated initial thickening growth of storage root by enhancing proliferation of metaxylem and cambium cells in sweetpotato (Ipomoea batatas)

(2010) Seol Ah Noh et al.   JOURNAL OF EXPERIMENTAL BOTANY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcriptome analysis by strand-specific sequencing of complementary DNA

(2009) Dmitri Parkhomchuk et al.   NUCLEIC ACIDS RESEARCH

IbMADS1 (Ipomoea batatas MADS-box 1 gene) is Involved in Tuberous Root Initiation in Sweet Potato (Ipomoea batatas)

(2008) Amy Tsu Ku et al.   ANNALS OF BOTANY