Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences

On the origin of sweet potato (Ipomoea batatas (L.) Lam.) genetic diversity in New Guinea, a secondary centre of diversity

(2013) C Roullier et al.   HEREDITY

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

From the Cover: Cozzarelli Prize Winner: Historical collections reveal patterns of diffusion of sweet potato in Oceania obscured by modern plant movements and recombination

(2013) C. Roullier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci

(2013) Christopher L. Schardl et al.   PLoS Genetics

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Lessons from flower colour evolution on targets of selection

(2012) Carolyn A. Wessinger et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Morning glory as a powerful model in ecological genomics: tracing adaptation through both natural and artificial selection

(2011) R S Baucom et al.   HEREDITY

Combining chloroplast and nuclear microsatellites to investigate origin and dispersal of New World sweet potato landraces

(2011) C. ROULLIER et al.   MOLECULAR ECOLOGY

Periglandula, a new fungal genus within the Clavicipitaceae and its association with Convolvulaceae

(2011) Ulrike Steiner et al.   MYCOLOGIA

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees

(2011) Kevin Liu et al.   SYSTEMATIC BIOLOGY

POPULATION GENETICS, PLEIOTROPY, AND THE PREFERENTIAL FIXATION OF MUTATIONS DURING ADAPTIVE EVOLUTION

(2010) Matthew A. Streisfeld et al.   EVOLUTION

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

(2010) M. J. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic changes contributing to the parallel evolution of red floral pigmentation amongIpomoeaspecies

(2009) Matthew A. Streisfeld et al.   NEW PHYTOLOGIST

Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

(2009) K. Liu et al.   SCIENCE

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

Biogeographic diversification inNolana(Solanaceae), a ubiquitous member of the Atacama and Peruvian Deserts along the western coast of South America

(2009) Michael O. DILLON et al.   Journal of Systematics and Evolution

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Phylogenetic relationships of aroids and duckweeds (Araceae) inferred from coding and noncoding plastid DNA

(2008) L. I. Cabrera et al.   AMERICAN JOURNAL OF BOTANY

IS FLORAL SPECIALIZATION AN EVOLUTIONARY DEAD-END POLLINATION SYSTEM TRANSITIONS INRUELLIA(ACANTHACEAE)

(2008) Erin A. Tripp et al.   EVOLUTION

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Evolutionary Transitions in Floral Color

(2008) Mark D. Rausher   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Phylogenetic Analysis Informed by Geological History Supports Multiple, Sequential Invasions of the Mediterranean Basin by the Angiosperm Family Araceae

(2008) Guilhem Mansion et al.   SYSTEMATIC BIOLOGY

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY

Modeling the prehistoric arrival of the sweet potato in Polynesia

(2007) Álvaro Montenegro et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE