Large-Scale Transcriptome Analysis of Two Sugarcane Genotypes Contrasting for Lignin Content

Ancient origin of the biosynthesis of lignin precursors

(2015) Leen Labeeuw et al.   Biology Direct

4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid:Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa

(2015) Chien-Yuan Lin et al.   Molecular Plant

Expression Profile of Sugarcane Transcription Factor Genes Involved in Lignin Biosynthesis

(2015) Michael Santos Brito et al.   Tropical Plant Biology

Building the sugarcane genome for biotechnology and identifying evolutionary trends

(2014) Nathalia de Setta et al.   BMC GENOMICS

Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin inPopulus trichocarpa

(2014) Jack P. Wang et al.   PLANT CELL

Complexity of the transcriptional network controlling secondary wall biosynthesis

(2014) Ruiqin Zhong et al.   PLANT SCIENCE

De Novo Assembly and Transcriptome Analysis of Contrasting Sugarcane Varieties

(2014) Claudio Benicio Cardoso-Silva et al.   PLoS One

Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana

(2013) Rebecca Van Acker et al.   Biotechnology for Biofuels

Expression of SofLAC, a new laccase in sugarcane, restores lignin content but not S:G ratio of Arabidopsis lac17 mutant

(2013) Igor Cesarino et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Genomics Approach to Deciphering Lignin Biosynthesis in Switchgrass

(2013) H. Shen et al.   PLANT CELL

Arabidopsis Kelch Repeat F-Box Proteins Regulate Phenylpropanoid Biosynthesis via Controlling the Turnover of Phenylalanine Ammonia-Lyase

(2013) X. Zhang et al.   PLANT CELL

Early lignin pathway enzymes and routes to chlorogenic acid in switchgrass (Panicum virgatum L.)

(2013) Luis L. Escamilla-Treviño et al.   PLANT MOLECULAR BIOLOGY

Lignification in Sugarcane: Biochemical Characterization, Gene Discovery, and Expression Analysis in Two Genotypes Contrasting for Lignin Content

(2013) A. Bottcher et al.   PLANT PHYSIOLOGY

Monolignol Pathway 4-Coumaric Acid:Coenzyme A Ligases in Populus. trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes

(2013) H.-C. Chen et al.   PLANT PHYSIOLOGY

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis

(2013) R. Vanholme et al.   SCIENCE

An overview of lignin metabolism and its effect on biomass recalcitrance

(2013) Igor Cesarino et al.   Brazilian Journal of Botany

Biomass recalcitrance. Part I: the chemical compositions and physical structures affecting the enzymatic hydrolysis of lignocellulose

(2012) Xuebing Zhao et al.   Biofuels Bioproducts & Biorefining-Biofpr

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Can genetic engineering of lignin deposition be accomplished without an unacceptable yield penalty?

(2012) Nicholas D Bonawitz et al.   CURRENT OPINION IN BIOTECHNOLOGY

How Do Sugars Regulate Plant Growth and Development? New Insight into the Role of Trehalose-6-Phosphate

(2012) Liam E. O’Hara et al.   Molecular Plant

Metabolic engineering of novel lignin in biomass crops

(2012) Ruben Vanholme et al.   NEW PHYTOLOGIST

RNAi suppression of lignin biosynthesis in sugarcane reduces recalcitrance for biofuel production from lignocellulosic biomass

(2012) Je Hyeong Jung et al.   PLANT BIOTECHNOLOGY JOURNAL

A Systems Biology View of Responses to Lignin Biosynthesis Perturbations in Arabidopsis

(2012) R. Vanholme et al.   PLANT CELL

Enzymatic activity and proteomic profile of class III peroxidases during sugarcane stem development

(2012) Igor Cesarino et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Suspension cell culture as a tool for the characterization of class III peroxidases in sugarcane

(2012) Igor Cesarino et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

Genetically modified sugarcane for bioenergy generation

(2011) Paulo Arruda   CURRENT OPINION IN BIOTECHNOLOGY

Expression of genes from the lignin synthesis pathway in guineagrass genotypes differing in cell-wall digestibility

(2011) S. S. Stabile et al.   GRASS AND FORAGE SCIENCE

Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses

(2011) P. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Grass phenylpropanoids: Regulate before using!

(2011) John Gray et al.   PLANT SCIENCE

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

(2011) Jason S. Cumbie et al.   PLoS One

Transcriptional networks for lignin biosynthesis: more complex than we thought?

(2011) Qiao Zhao et al.   TRENDS IN PLANT SCIENCE

Integrative Analysis of Transgenic Alfalfa (Medicago sativa L.) Suggests New Metabolic Control Mechanisms for Monolignol Biosynthesis

(2011) Yun Lee et al.   PLoS Computational Biology

Genetic and biotechnological approaches for biofuel crop improvement

(2010) Miguel E Vega-Sánchez et al.   CURRENT OPINION IN BIOTECHNOLOGY

Advances in modifying lignin for enhanced biofuel production

(2010) Blake A Simmons et al.   CURRENT OPINION IN PLANT BIOLOGY

Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants

(2010) Y. Chi et al.   DNA RESEARCH

Survey of Genomics Approaches to Improve Bioenergy Traits in Maize, Sorghum and SugarcaneFree Access

(2010) Wilfred Vermerris   Journal of Integrative Plant Biology

Engineering traditional monolignols out of lignin by concomitant up-regulation of F5H1 and down-regulation of COMT in Arabidopsis

(2010) Ruben Vanholme et al.   PLANT JOURNAL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom

(2009) Zhanyou Xu et al.   BMC BIOINFORMATICS

A microarray-based method for the parallel analysis of genotypes and expression profiles of wood-forming tissues in Eucalyptus grandis

(2009) Eugenia Barros et al.   BMC BIOTECHNOLOGY

Sugarcane genes associated with sucrose content

(2009) Flavia S Papini-Terzi et al.   BMC GENOMICS

Production of bioethanol and other bio-based materials from sugarcane bagasse: Integration to conventional bioethanol production process

(2009) Marina O.S. Dias et al.   CHEMICAL ENGINEERING RESEARCH & DESIGN

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

(2009) Rui Shi et al.   PLANT AND CELL PHYSIOLOGY

A Nonsense Mutation in a Cinnamyl Alcohol Dehydrogenase Gene Is Responsible for the Sorghum brown midrib6 Phenotype

(2009) S. E. Sattler et al.   PLANT PHYSIOLOGY

Emerging strategies of lignin engineering and degradation for cellulosic biofuel production

(2008) Jing-Ke Weng et al.   CURRENT OPINION IN BIOTECHNOLOGY

A Genomewide Analysis of the Cinnamyl Alcohol Dehydrogenase Family in Sorghum [Sorghum bicolor (L.) Moench] Identifies SbCAD2 as the Brown midrib6 Gene

(2008) A. Saballos et al.   GENETICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Improvement of biomass through lignin modification

(2008) Xu Li et al.   PLANT JOURNAL

Plants to power: bioenergy to fuel the future

(2008) Joshua S. Yuan et al.   TRENDS IN PLANT SCIENCE