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A review of the basics of mitochondrial bioenergetics, metabolism, and related signaling pathways in cancer cells: Therapeutic targeting of tumor mitochondria with lipophilic cationic compounds

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Hypermutated tumours in the era of immunotherapy: The paradigm of personalised medicine

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SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data

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(2017) Yang Zhao et al.   Molecular Cancer

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Cordycepin promotes apoptosis in renal carcinoma cells by activating the MKK7-JNK signaling pathway through inhibition of c-FLIPL expression

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Integrating omics data and protein interaction networks to prioritize driver genes in cancer

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Aldo–Keto Reductase AKR1C1–AKR1C4: Functions, Regulation, and Intervention for Anti-cancer Therapy

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Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration

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KEGG: new perspectives on genomes, pathways, diseases and drugs

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LEGO: a novel method for gene set over-representation analysis by incorporating network-based gene weights

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Activity-Based Protein Profiling of Oncogene-Driven Changes in Metabolism Reveals Broad Dysregulation of PAFAH1B2 and 1B3 in Cancer

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Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential

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TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

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Detection of gene communities in multi-networks reveals cancer drivers

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e-Driver: a novel method to identify protein regions driving cancer

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OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes

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Decreased expression and aberrant methylation of Gadd45G is associated with tumor progression and poor prognosis in esophageal squamous cell carcinoma

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IDO1 Metabolites Activate β-catenin Signaling to Promote Cancer Cell Proliferation and Colon Tumorigenesis in Mice

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Clinical response to chemotherapy in oesophageal adenocarcinoma patients is linked to defects in mitochondria

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(2013) Michael S. Lawrence et al.   NATURE

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Identifying In-Trans Process Associated Genes in Breast Cancer by Integrated Analysis of Copy Number and Expression Data

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DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

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Efficient methods for identifying mutated driver pathways in cancer

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Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome

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FN1, GALE, MET, and QPCT overexpression in papillary thyroid carcinoma: Molecular analysis using frozen tissue and routine fine-needle aspiration biopsy samples

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Aldehyde Dehydrogenase 3B1 (ALDH3B1): Immunohistochemical Tissue Distribution and Cellular-specific Localization in Normal and Cancerous Human Tissues

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(2010) Sung Hak Lee et al.   Korean Journal of Pathology

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(2010) Simona Negrini et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

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Automated Network Analysis Identifies Core Pathways in Glioblastoma

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(2009) Michael R. Stratton et al.   NATURE

Inverse Correlation between Tumoral Indoleamine 2,3-Dioxygenase Expression and Tumor-Infiltrating Lymphocytes in Endometrial Cancer: Its Association with Disease Progression and Survival

(2008) K. Ino et al.   CLINICAL CANCER RESEARCH

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Comprehensive genomic characterization defines human glioblastoma genes and core pathways

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