A network-based gene-weighting approach for pathway analysis

Bayesian gene set analysis for identifying significant biological pathways

(2011) Babak Shahbaba et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS

Decreased Fibronectin Production Significantly Contributes to Dysregulated Repair of Asthmatic Epithelium

(2010) Anthony Kicic et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP

(2010) Troy Hawkins et al.   BMC BIOINFORMATICS

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

(2010) Ignacio Medina et al.   NUCLEIC ACIDS RESEARCH

Prior biological knowledge-based approaches for the analysis of genome-wide expression profiles using gene sets and pathways

(2010) Michael C Wu et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Identification of functional modules that correlate with phenotypic difference: the influence of network topology

(2010) Jui-Hung Hung et al.   GENOME BIOLOGY

Identification of differential gene pathways with principal component analysis

(2009) Shuangge Ma et al.   BIOINFORMATICS

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Global networks of functional coupling in eukaryotes from comprehensive data integration

(2009) A. Alexeyenko et al.   GENOME RESEARCH

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Choosing the right path: enhancement of biologically relevant sets of genes or proteins using pathway structure

(2009) Reuben Thomas et al.   GENOME BIOLOGY

A novel signaling pathway impact analysis

(2008) Adi Laurentiu Tarca et al.   BIOINFORMATICS

Testing gene set enrichment for subset of genes: Sub-GSE

(2008) Xiting Yan et al.   BMC BIOINFORMATICS

WikiPathways: Pathway Editing for the People

(2008) Alexander R Pico et al.   PLOS BIOLOGY