Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Engineering electron metabolism to increase ethanol production in Clostridium thermocellum

(2017) Jonathan Lo et al.   METABOLIC ENGINEERING

Glycolysis without pyruvate kinase in Clostridium thermocellum

(2017) Daniel G. Olson et al.   METABOLIC ENGINEERING

Deletion of Type I glutamine synthetase deregulates nitrogen metabolism and increases ethanol production in Clostridium thermocellum

(2017) Thomas Rydzak et al.   METABOLIC ENGINEERING

The ethanol pathway from Thermoanaerobacterium saccharolyticum improves ethanol production in Clostridium thermocellum

(2017) Shuen Hon et al.   METABOLIC ENGINEERING

Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85

(2017) Chia-wei Wu et al.   Scientific Reports

Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells

(2017) Alexandru Dumitrache et al.   Scientific Reports

Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum

(2017) Tobin J. Verbeke et al.   Scientific Reports

Load- and polysaccharide-dependent activation of the Na+-type MotPS stator in the Bacillus subtilis flagellar motor

(2017) Naoya Terahara et al.   Scientific Reports

LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313

(2016) Charlotte M. Wilson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure

(2016) Alexandru Dumitrache et al.   Biotechnology for Biofuels

Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum

(2016) Liang Tian et al.   Biotechnology for Biofuels

Dramatic performance ofClostridium thermocellumexplained by its wide range of cellulase modalities

(2016) Qi Xu et al.   Science Advances

Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

(2015) Kyle Sander et al.   Biotechnology for Biofuels

Elimination of hydrogenase active site assembly blocks H2 production and increases ethanol yield in Clostridium thermocellum

(2015) Ranjita Biswas et al.   Biotechnology for Biofuels

Elimination of formate production in Clostridium thermocellum

(2015) Thomas Rydzak et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Elimination of metabolic pathways to all traditional fermentation products increases ethanol yields in Clostridium thermocellum

(2015) Beth Papanek et al.   METABOLIC ENGINEERING

Consolidated bioprocessing of cellulose to isobutanol using Clostridium thermocellum

(2015) Paul P. Lin et al.   METABOLIC ENGINEERING

The identification of four histidine kinases that influence sporulation in Clostridium thermocellum

(2014) Elizabeth B. Mearls et al.   ANAEROBE

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading

(2014) Evert K Holwerda et al.   Biotechnology for Biofuels

Atypical Glycolysis in Clostridium thermocellum

(2013) Jilai Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Expression and Characterization of a Glutamate Decarboxylase fromLactobacillus brevis877G Producing γ-Aminobutyric Acid

(2013) Myung-Ji SEO et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Tracking the cellulolytic activity of Clostridium thermocellum biofilms

(2013) Alexandru Dumitrache et al.   Biotechnology for Biofuels

Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress

(2013) Charlotte M Wilson et al.   Biotechnology for Biofuels

Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways

(2013) Douwe van der Veen et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Dcm methylation is detrimental to plasmid transformation in Clostridium thermocellum

(2012) Adam M Guss et al.   Biotechnology for Biofuels

Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms

(2012) Elizabeth B Mearls et al.   BMC MICROBIOLOGY

Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression

(2012) Thomas Rydzak et al.   BMC MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

High Ethanol Titers from Cellulose by Using Metabolically Engineered Thermophilic, Anaerobic Microbes

(2011) D. Aaron Argyros et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum

(2011) Xiongjun Shao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Closing the carbon balance for fermentation by Clostridium thermocellum (ATCC 27405)

(2011) Lucas D. Ellis et al.   BIORESOURCE TECHNOLOGY

Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

(2011) S. D. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of pyrF-Based Genetic System for Targeted Gene Deletion in Clostridium thermocellum and Creation of a pta Mutant

(2010) S. A. Tripathi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Probing tRNA interaction with biogenic polyamines

(2010) A. A. Ouameur et al.   RNA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

From cellulosomes to cellulosomics

(2008) Edward A. Bayer et al.   CHEMICAL RECORD

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH