Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress

An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale

(2013) Qin Ma et al.   BIOINFORMATICS

Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 to elucidate role of furfural stress during acetone butanol ethanol fermentation

(2013) Yan Zhang et al.   Biotechnology for Biofuels

Metabolic control of Clostridium thermocellum via inhibition of hydrogenase activity and the glucose transport rate

(2012) Hsin-Fen Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Over-expression of stress protein-encoding genes helps Clostridium acetobutylicum to rapidly adapt to butanol stress

(2012) Miriam S. Mann et al.   BIOTECHNOLOGY LETTERS

Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress

(2012) Shihui Yang et al.   BMC GENOMICS

Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression

(2012) Thomas Rydzak et al.   BMC MICROBIOLOGY

Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2

(2012) S. D. Brown et al.   JOURNAL OF BACTERIOLOGY

A Trapping Approach Reveals Novel Substrates and Physiological Functions of the Essential Protease FtsH inEscherichia coli

(2012) Kai Westphal et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis

(2012) Hagen Richter et al.   NUCLEIC ACIDS RESEARCH

High Ethanol Titers from Cellulose by Using Metabolically Engineered Thermophilic, Anaerobic Microbes

(2011) D. Aaron Argyros et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Co-transcription of the celC gene cluster in Clostridium thermocellum

(2011) Michael Newcomb et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405

(2011) Thomas Rydzak et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Closing the carbon balance for fermentation by Clostridium thermocellum (ATCC 27405)

(2011) Lucas D. Ellis et al.   BIORESOURCE TECHNOLOGY

Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation

(2011) Babu Raman et al.   BMC MICROBIOLOGY

Complete Genome Sequence of the Cellulolytic Thermophile Clostridium thermocellum DSM1313

(2011) L. Feinberg et al.   JOURNAL OF BACTERIOLOGY

Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

(2011) S. D. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Gene Expression Patterns inClostridium thermocellumas Determined by Microarray Analysis of Chemostat Cultures on Cellulose or Cellobiose

(2010) Allison Riederer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of pyrF-Based Genetic System for Targeted Gene Deletion in Clostridium thermocellum and Creation of a pta Mutant

(2010) S. A. Tripathi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Furfural induces reactive oxygen species accumulation and cellular damage in Saccharomyces cerevisiae

(2010) Sandra A Allen et al.   Biotechnology for Biofuels

Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production

(2010) Seth B Roberts et al.   BMC Systems Biology

The unique set of putative membrane-associated anti-σ factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation

(2010) Hamutal Kahel-Raifer et al.   FEMS MICROBIOLOGY LETTERS

Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production

(2010) C. L. Hemme et al.   JOURNAL OF BACTERIOLOGY

A new framework for identifying cis-regulatory motifs in prokaryotes

(2010) Guojun Li et al.   NUCLEIC ACIDS RESEARCH

Deletion of the Cel48S cellulase fromClostridium thermocellum

(2010) Daniel G. Olson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Furfural Inhibits Growth by Limiting Sulfur Assimilation in Ethanologenic Escherichia coli Strain LY180

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

(2009) Shihui Yang et al.   BMC GENOMICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Impact of Pretreated Switchgrass and Biomass Carbohydrates on Clostridium thermocellum ATCC 27405 Cellulosome Composition: A Quantitative Proteomic Analysis

(2009) Babu Raman et al.   PLoS One

Bacterial Cellulose Hydrolysis in Anaerobic Environmental Subsystems-Clostridium thermocellumandClostridium stercorarium, Thermophilic Plant-fiber Degraders

(2008) Vladimir V. Zverlov et al.   Annals of the New York Academy of Sciences

From cellulosomes to cellulosomics

(2008) Edward A. Bayer et al.   CHEMICAL RECORD

Cellodextrin and Laminaribiose ABC Transporters in Clostridium thermocellum

(2008) Y. Nataf et al.   JOURNAL OF BACTERIOLOGY