A guide to large-scale RNA sample preparation

Purification and characterisation of dsRNA using ion pair reverse phase chromatography and mass spectrometry

(2017) Alison O. Nwokeoji et al.   JOURNAL OF CHROMATOGRAPHY A

Separation of small interfering RNA stereoisomers using reversed-phase ion-pairing chromatography

(2017) Li Li et al.   JOURNAL OF CHROMATOGRAPHY A

Evaluation of size-exclusion chromatography for the analysis of phosphorothioate oligonucleotides

(2017) Atsuko Shimoyama et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

Polymerase Chain Transcription: Exponential Synthesis of RNA and Modified RNA

(2017) Tingjian Chen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Integrated structural biology to unravel molecular mechanisms of protein-RNA recognition

(2017) Andreas Schlundt et al.   METHODS

Structural and Biochemical Properties of Novel Self-Cleaving Ribozymes

(2017) et al.   MOLECULES

Cryo-electron microscopy wins chemistry Nobel

(2017) Daniel Cressey et al.   NATURE

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

(2017) Zhichao Miao et al.   RNA

New insights for therapeutic recombinant human miRNAs heterologous production: Rhodovolum sulfidophilum vs Escherichia coli

(2017) Patrícia Pereira et al.   Bioengineered

Advances in time course extracellular production of human pre-miR-29b from Rhodovulum sulfidophilum

(2016) Patrícia Pereira et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Affinity approaches in RNAi-based therapeutics purification

(2016) Patrícia Pereira et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Whither Ribosome Structure and Dynamics Research? (A Perspective)

(2016) Joachim Frank   JOURNAL OF MOLECULAR BIOLOGY

Characterizing 3D RNA structure by single molecule FRET

(2016) James D. Stephenson et al.   METHODS

Applications of PLOR in labeling large RNAs at specific sites

(2016) Yu Liu et al.   METHODS

Characterizing RNA structures in vitro and in vivo with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

(2016) Kyle E. Watters et al.   METHODS

Evolution of thermophilic DNA polymerases for the recognition and amplification of C2ʹ-modified DNA

(2016) Tingjian Chen et al.   Nature Chemistry

NMR detection of intermolecular interaction sites in the dimeric 5′-leader of the HIV-1 genome

(2016) Sarah C. Keane et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NMR solution structure determination of large RNA-protein complexes

(2016) Deepak Kumar Yadav et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

RNA structure through multidimensional chemical mapping

(2016) Siqi Tian et al.   QUARTERLY REVIEWS OF BIOPHYSICS

SAXS studies of RNA: structures, dynamics, and interactions with partners

(2016) Yujie Chen et al.   Wiley Interdisciplinary Reviews-RNA

Bioengineering of noncoding RNAs for research agents and therapeutics

(2016) Pui Yan Ho et al.   Wiley Interdisciplinary Reviews-RNA

Bioengineered non-coding RNA agent (BERA) in action

(2016) Zhijian Duan et al.   Bioengineered

Structure and Mechanism of RNA Mimics of Green Fluorescent Protein

(2015) Mingxu You et al.   Annual Review of Biophysics

Review toward all RNA structures, concisely

(2015) Kevin M. Weeks   BIOPOLYMERS

Catalysts for RNA and DNA modification

(2015) Dennis Gillingham et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Rapid NMR screening of RNA secondary structure and binding

(2015) Christina Helmling et al.   JOURNAL OF BIOMOLECULAR NMR

Visualizing transient Watson–Crick-like mispairs in DNA and RNA duplexes

(2015) Isaac J. Kimsey et al.   NATURE

Synthesis and applications of RNAs with position-selective labelling and mosaic composition

(2015) Yu Liu et al.   NATURE

New classes of self-cleaving ribozymes revealed by comparative genomics analysis

(2015) Zasha Weinberg et al.   Nature Chemical Biology

RNA circularization strategies in vivo and in vitro

(2015) Sonja Petkovic et al.   NUCLEIC ACIDS RESEARCH

Metazoan tRNA introns generate stable circular RNAs in vivo

(2015) Zhipeng Lu et al.   RNA

Hierarchy of RNA Functional Dynamics

(2014) Anthony M. Mustoe et al.   Annual Review of Biochemistry

The Ribosome Emerges from a Black Box

(2014) V. Ramakrishnan   CELL

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Advances in methods for native expression and purification of RNA for structural studies

(2014) Robert T Batey   CURRENT OPINION IN STRUCTURAL BIOLOGY

Ribonucleic acid purification

(2014) R. Martins et al.   JOURNAL OF CHROMATOGRAPHY A

Synthesis and Biophysical Properties of C5-Functionalized LNA (Locked Nucleic Acid)

(2014) Pawan Kumar et al.   JOURNAL OF ORGANIC CHEMISTRY

RNA synthesis and purification for structural studies

(2014) Yasar Luqman Ahmed et al.   RNA Biology

DNA polymerases engineered by directed evolution to incorporate non-standard nucleotides

(2014) Roberto Laos et al.   Frontiers in Microbiology

Single-nucleotide resolution of RNAs up to 59 nucleotides by high-performance liquid chromatography

(2013) Zhen Huang et al.   ANALYTICAL BIOCHEMISTRY

A widespread self-cleaving ribozyme class is revealed by bioinformatics

(2013) Adam Roth et al.   Nature Chemical Biology

2′-Azido RNA, a Versatile Tool for Chemical Biology: Synthesis, X-ray Structure, siRNA Applications, Click Labeling

(2012) Katja Fauster et al.   ACS Chemical Biology

Synthesis of (6-13C)Pyrimidine Nucleotides as Spin-Labels for RNA Dynamics

(2012) Christoph H. Wunderlich et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

(2012) Nicholas T Ingolia et al.   Nature Protocols

Mechanism of RNA 2′,3′-cyclic phosphate end healing by T4 polynucleotide kinase–phosphatase

(2012) Ushati Das et al.   NUCLEIC ACIDS RESEARCH

A short adaptive path from DNA to RNA polymerases

(2012) C. Cozens et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultraviolet Shadowing of RNA Can Cause Significant Chemical Damage in Seconds

(2012) Wipapat Kladwang et al.   Scientific Reports

A brief review of DNA and RNA chemical synthesis: Figure 1

(2011) Marvin H. Caruthers   BIOCHEMICAL SOCIETY TRANSACTIONS

The oligodeoxynucleotide probes for the site-specific modification of RNA

(2011) Shigeki Sasaki et al.   CHEMICAL SOCIETY REVIEWS

Chromatographic methods for the determination of therapeutic oligonucleotides

(2011) A. Cary McGinnis et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Streamlined Process for the Chemical Synthesis of RNA Using 2′-O-Thionocarbamate-Protected Nucleoside Phosphoramidites in the Solid Phase

(2011) Douglas J. Dellinger et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Large scale expression and purification of recombinant RNA in Escherichia coli

(2011) Luc Ponchon et al.   METHODS

RNA labeling, conjugation and ligation

(2011) Eduardo Paredes et al.   METHODS

Structure determination and dynamics of protein–RNA complexes by NMR spectroscopy

(2010) Cyril Dominguez et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

RNA Reactions One Molecule at a Time

(2010) I. Tinoco et al.   Cold Spring Harbor Perspectives in Biology

Reversed-phase ion-pair liquid chromatography analysis and purification of small interfering RNA

(2009) Sean M. McCarthy et al.   ANALYTICAL BIOCHEMISTRY

Extracellular Production of an RNA Aptamer by Ribonuclease-Free Marine Bacteria Harboring Engineered Plasmids: a Proposal for Industrial RNA Drug Production

(2009) H. Suzuki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isotope labeling strategies for NMR studies of RNA

(2009) Kun Lu et al.   JOURNAL OF BIOMOLECULAR NMR

Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green

(2009) Xing Zhang et al.   JOURNAL OF MOLECULAR RECOGNITION

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold

(2009) Luc Ponchon et al.   Nature Protocols

Key Labeling Technologies to Tackle Sizeable Problems in RNA Structural Biology

(2008) Kwaku Dayie   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Crystallographic studies of DNA and RNA

(2008) Blaine H.M. Mooers   METHODS

Isothermal titration calorimetry of RNA

(2008) Nilshad N. Salim et al.   METHODS