Can we build it? Yes we can, but should we use it? Assessing the quality and value of a very large phylogeny of campanulid angiosperms

Contentious relationships in phylogenomic studies can be driven by a handful of genes

(2017) Xing-Xing Shen et al.   Nature Ecology & Evolution

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction

(2016) Jeremy M. Beaulieu et al.   SYSTEMATIC BIOLOGY

Insights into the phylogeny and evolutionary history of Calyceraceae

(2016) SilviaS. Denham et al.   TAXON

Assessing the Fossil Record of Asterids in the Context of Our Current Phylogenetic Framework1

(2015) Steven R. Manchester et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Extinction can be estimated from moderately sized molecular phylogenies

(2015) Jeremy M. Beaulieu et al.   EVOLUTION

No substitute for real data: A cautionary note on the use of phylogenies from birth-death polytomy resolvers for downstream comparative analyses

(2015) Daniel L. Rabosky   EVOLUTION

Doubtful pathways to cold tolerance in plants

(2015) Erika J. Edwards et al.   NATURE

Temperate radiations and dying embers of a tropical past: the diversification ofViburnum

(2015) Elizabeth L. Spriggs et al.   NEW PHYTOLOGIST

Phylogenetic uncertainty and fossil calibration of Asteraceae chronograms

(2015) Jose L. Panero   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica

(2015) Viviana D. Barreda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impacts of Terraces on Phylogenetic Inference

(2015) Michael J. Sanderson et al.   SYSTEMATIC BIOLOGY

Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms

(2015) Jeremy M. Beaulieu et al.   SYSTEMATIC BIOLOGY

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

(2014) Matthew W. Pennell et al.   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana

(2013) Jeremy M Beaulieu et al.   BMC EVOLUTIONARY BIOLOGY

Analysis of supercooling activity of tannin-related polyphenols

(2013) Chikako Kuwabara et al.   CRYOBIOLOGY

Adaptive mechanisms of freeze avoidance in plants: A brief update

(2013) Michael Wisniewski et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

FRUIT EVOLUTION AND DIVERSIFICATION IN CAMPANULID ANGIOSPERMS

(2013) Jeremy M. Beaulieu et al.   EVOLUTION

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms

(2013) Jeremy M. Beaulieu et al.   SYSTEMATIC BIOLOGY

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Taller plants have lower rates of molecular evolution

(2013) Robert Lanfear et al.   Nature Communications

Congruification: support for time scaling large phylogenetic trees

(2013) Jonathan M. Eastman et al.   Methods in Ecology and Evolution

treePL: divergence time estimation using penalized likelihood for large phylogenies

(2012) Stephen A. Smith et al.   BIOINFORMATICS

Synthesizing phylogenetic knowledge for ecological research

(2012) Jeremy M. Beaulieu et al.   ECOLOGY

Angiosperm phylogeny: 17 genes, 640 taxa

(2011) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES

(2011) Jonathan M. Eastman et al.   EVOLUTION

Inconsistencies in Estimating the Age of HIV-1 Subtypes Due to Heterotachy

(2011) J. O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

New fossil endocarps of Sambucus (Adoxaceae) from the upper Pliocene in SW China

(2011) Yongjiang Huang et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Terraces in Phylogenetic Tree Space

(2011) M. J. Sanderson et al.   SCIENCE

Phylogenomics with incomplete taxon coverage: the limits to inference

(2010) Michael J Sanderson et al.   BMC EVOLUTIONARY BIOLOGY

Climatic change during the Palaeocene to Eocene based on fossil plants from Fushun, China

(2010) Qing Wang et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa

(2010) David C. Tank et al.   SYSTEMATIC BOTANY

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

(2009) Stephen A Smith et al.   BMC EVOLUTIONARY BIOLOGY

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

(2008) S. A. Smith et al.   BIOINFORMATICS

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

(2008) S. A. Smith et al.   SCIENCE