N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes

Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling

(2016) Kenji Nakahigashi et al.   DNA RESEARCH

Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria

(2016) D. Dar et al.   SCIENCE

An O2-sensing stressosome from a Gram-negative bacterium

(2016) Xin Jia et al.   Nature Communications

Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling

(2016) Fuad Mohammad et al.   Cell Reports

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

(2015) Konstantinos D. Tsirigos et al.   NUCLEIC ACIDS RESEARCH

Proteome-wide analysis of the amino terminal status ofEscherichia coliproteins at the steady-state and upon deformylation inhibition

(2015) Willy V. Bienvenut et al.   PROTEOMICS

High-Precision Analysis of Translational Pausing by Ribosome Profiling in Bacteria Lacking EFP

(2015) Christopher J. Woolstenhulme et al.   Cell Reports

The Escherichia coli Small Protein MntS and Exporter MntP Optimize the Intracellular Concentration of Manganese

(2015) Julia E. Martin et al.   PLoS Genetics

Small Proteins Can No Longer Be Ignored

(2014) Gisela Storz et al.   Annual Review of Biochemistry

N-Terminal-oriented Proteogenomics of the Marine BacteriumRoseobacter DenitrificansOch114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) Labeling and Diagonal Chromatography

(2014) Céline Bland et al.   MOLECULAR & CELLULAR PROTEOMICS

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli

(2014) Rohan Balakrishnan et al.   NUCLEIC ACIDS RESEARCH

Comparison of Widely Used Listeria monocytogenes Strains EGD, 10403S, and EGD-e Highlights Genomic Differences Underlying Variations in Pathogenicity

(2014) C. Becavin et al.   mBio

Two enzymes, TilS and HprT, can form a complex to function as a transcriptional activator for the cell division protease gene ftsH in Bacillus subtilis

(2013) Ta-Hui Lin et al.   JOURNAL OF BIOCHEMISTRY

Cycles of light and dark co-ordinate reversible colony differentiation inListeria monocytogenes

(2013) Teresa Tiensuu et al.   MOLECULAR MICROBIOLOGY

RefSeq microbial genomes database: new representation and annotation strategy

(2013) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

A riboswitch-regulated antisense RNA in Listeria monocytogenes

(2013) J. R. Mellin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Role for SIRT2-Dependent Histone H3K18 Deacetylation in Bacterial Infection

(2013) H. A. Eskandarian et al.   SCIENCE

RsbV of Listeria monocytogenes contributes to regulation of environmental stress and virulence

(2012) Zaichao Zhang et al.   ARCHIVES OF MICROBIOLOGY

Perturbation of the Oxidizing Environment of the Periplasm Stimulates the PhoQ/PhoP System in Escherichia coli

(2012) A. M. Lippa et al.   JOURNAL OF BACTERIOLOGY

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

(2012) Omri Wurtzel et al.   Molecular Systems Biology

The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria

(2012) Gene-Wei Li et al.   NATURE

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Subcellular Localization of Extracytoplasmic Proteins in Monoderm Bacteria: Rational Secretomics-Based Strategy for Genomic and Proteomic Analyses

(2012) Sandra Renier et al.   PLoS One

Impact of lactobacilli on orally acquired listeriosis

(2012) C. Archambaud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selective Ribosome Profiling Reveals the Cotranslational Chaperone Action of Trigger Factor In Vivo

(2011) Eugene Oh et al.   CELL

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

Tandem Translation Generates a Chaperone for theSalmonellaType III Secretion System Protein SsaQ

(2011) Xiu-Jun Yu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Selecting protein N-terminal peptides by combined fractional diagonal chromatography

(2011) An Staes et al.   Nature Protocols

Illuminating the landscape of host-pathogen interactions with the bacterium Listeria monocytogenes

(2011) P. Cossart   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-Cell Techniques Using Chromosomally Tagged Fluorescent Bacteria To Study Listeria monocytogenes Infection Processes

(2010) D. Balestrino et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The stressosome: molecular architecture of a signalling hub

(2010) Jon Marles-Wright et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Translation initiation: variations in the mechanism can be anticipated

(2010) Naglis Malys et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The bacterial N-end rule pathway: expect the unexpected

(2010) D. A. Dougan et al.   MOLECULAR MICROBIOLOGY

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics

(2010) Kenny Helsens et al.   PROTEOMICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Synergistic Cooperation between Two ClpB Isoforms in Aggregate Reactivation

(2009) Maria Nagy et al.   JOURNAL OF MOLECULAR BIOLOGY

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

Feedback Inhibition in the PhoQ/PhoP Signaling System by a Membrane Peptide

(2009) Andrew M. Lippa et al.   PLoS Genetics

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Peptizer, a Tool for Assessing False Positive Peptide Identifications and Manually Validating Selected Results

(2008) Kenny Helsens et al.   MOLECULAR & CELLULAR PROTEOMICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Molecular Architecture of the "Stressosome," a Signal Integration and Transduction Hub

(2008) J. Marles-Wright et al.   SCIENCE

Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases

(2007) Lukas Käll et al.   JOURNAL OF PROTEOME RESEARCH