Precision annotation of digital samples in NCBI’s gene expression omnibus

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

(2016) Zichen Wang et al.   Nature Communications

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets

(2015) David Amar et al.   NUCLEIC ACIDS RESEARCH

A comprehensive time-course–based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set

(2015) Timothy E. Sweeney et al.   Science Translational Medicine

PCSK9: From discovery to therapeutic applications

(2014) Michel Farnier   Archives of Cardiovascular Diseases

ImmPort: disseminating data to the public for the future of immunology

(2014) Sanchita Bhattacharya et al.   IMMUNOLOGIC RESEARCH

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

(2014) Warren A. Kibbe et al.   NUCLEIC ACIDS RESEARCH

The impact of the metabotropic glutamate receptor and other gene family interaction networks on autism

(2014) Dexter Hadley et al.   Nature Communications

Integrating multiple ‘omics’ analyses identifies serological protein biomarkers for preeclampsia

(2013) Linda Y Liu et al.   BMC Medicine

Genomic Medicine, Precision Medicine, Personalized Medicine: What’s in a Name?

(2013) D M Roden et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Making it personal: translational bioinformatics

(2013) Atul J Butte et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

The Cancer Genome Atlas Pan-Cancer analysis project

(2013) John N Weinstein et al.   NATURE GENETICS

Peptidomic Identification of Serum Peptides Diagnosing Preeclampsia

(2013) Qiaojun Wen et al.   PLoS One

A Population Approach to Precision Medicine

(2012) Muin J. Khoury et al.   AMERICAN JOURNAL OF PREVENTIVE MEDICINE

A novel significance score for gene selection and ranking

(2012) Yufei Xiao et al.   BIOINFORMATICS

Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non-Small Cell Lung Cancer In Vivo

(2012) S. Vicent et al.   CANCER RESEARCH

Deep phenotyping for precision medicine

(2012) Peter N. Robinson   HUMAN MUTATION

Effect of a Monoclonal Antibody to PCSK9 on LDL Cholesterol

(2012) Evan A. Stein et al.   NEW ENGLAND JOURNAL OF MEDICINE

Preparing for Precision Medicine

(2012) Reza Mirnezami et al.   NEW ENGLAND JOURNAL OF MEDICINE

ArrayExpress update—trends in database growth and links to data analysis tools

(2012) Gabriella Rustici et al.   NUCLEIC ACIDS RESEARCH

BioGPS and MyGene.info: organizing online, gene-centric information

(2012) Chunlei Wu et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Promise of personalized omics to precision medicine

(2012) Rui Chen et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Personal genomes and precision medicine

(2012) Gareth Highnam et al.   GENOME BIOLOGY

Computational prediction and experimental validation associating FABP-1 and pancreatic adenocarcinoma with diabetes

(2011) Ravi N Sharaf et al.   BMC GASTROENTEROLOGY

Task Design, Motivation, and Participation in Crowdsourcing Contests

(2011) Haichao Zheng et al.   INTERNATIONAL JOURNAL OF ELECTRONIC COMMERCE

Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder

(2011) Josephine Elia et al.   NATURE GENETICS

Disease Ontology: a backbone for disease semantic integration

(2011) L. M. Schriml et al.   NUCLEIC ACIDS RESEARCH

Modeling sample variables with an Experimental Factor Ontology

(2010) James Malone et al.   BIOINFORMATICS

Protein Microarrays Discover Angiotensinogen and PRKRIP1 as Novel Targets for Autoantibodies in Chronic Renal Disease

(2010) Atul J. Butte et al.   MOLECULAR & CELLULAR PROTEOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Entrez Gene: gene-centered information at NCBI

(2010) D. Maglott et al.   NUCLEIC ACIDS RESEARCH

Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks

(2010) Joel T. Dudley et al.   Journal of Cardiovascular Translational Research

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions

(2010) Rong Chen et al.   PLoS Computational Biology

BioPortal: ontologies and integrated data resources at the click of a mouse

(2009) N. F. Noy et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH