A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies

Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities

(2012) Robert L. Hettich et al.   CURRENT OPINION IN MICROBIOLOGY

Exploring mixed microbial community functioning: recent advances in metaproteomics

(2012) Alma Siggins et al.   FEMS MICROBIOLOGY ECOLOGY

Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm

(2012) Pratik Jagtap et al.   PROTEOMICS

Deep metaproteomic analysis of human salivary supernatant

(2012) Pratik Jagtap et al.   PROTEOMICS

An iterative workflow for mining the human intestinal metaproteome

(2011) Koos Rooijers et al.   BMC GENOMICS

Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

(2011) Brandi L. Cantarel et al.   PLoS One

Proteogenomics to discover the full coding content of genomes: A computational perspective

(2010) Natalie Castellana et al.   Journal of Proteomics

The complete peptide dictionary - A meta-proteomics resource

(2010) Manor Askenazi et al.   PROTEOMICS

Proteogenomics

(2010) Santosh Renuse et al.   PROTEOMICS

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

(2010) T. Chen et al.   Database-The Journal of Biological Databases and Curation

Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches

(2008) Wilfred H. Tang et al.   JOURNAL OF PROTEOME RESEARCH