Transcriptome analysis of Polygonum minus reveals candidate genes involved in important secondary metabolic pathways of phenylpropanoids and flavonoids

Transcriptome analysis for identification of indigo biosynthesis pathway genes in Polygonum tinctorium

(2015) Yoshiko Minami et al.   BIOLOGIA

Comprehensive analysis of Panax ginseng root transcriptomes

(2015) Murukarthick Jayakodi et al.   BMC PLANT BIOLOGY

Metabolite profiling reveals temperature effects on the VOCs and flavonoids of different plant populations

(2015) H.-H. Goh et al.   PLANT BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

In vitro and ex-vivo cellular antioxidant protection and cognitive enhancing effects of an extract of Polygonum minus Huds (Lineminus™) demonstrated in a Barnes Maze animal model for memory and learning

(2014) Annie George et al.   BMC Complementary and Alternative Medicine

De novo transcriptome sequencing and digital gene expression analysis predict biosynthetic pathway of rhynchophylline and isorhynchophylline from Uncaria rhynchophylla, a non-model plant with potent anti-alzheimer’s properties

(2014) Qianqian Guo et al.   BMC GENOMICS

Volatile Profiling of Aromatic Traditional Medicinal Plant, Polygonum minus in Different Tissues and Its Biological Activities

(2014) Rafidah Ahmad et al.   MOLECULES

Establishment of Persicaria minor hairy roots and analysis of secreted β-caryophyllene in medium broth

(2014) Mehdi Farshad Ashraf et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Apoptosis Induction byPolygonum minusIs Related to Antioxidant Capacity, Alterations in Expression of Apoptotic-Related Genes, and S-Phase Cell Cycle Arrest in HepG2 Cell Line

(2014) Mohd Alfazari Mohd Ghazali et al.   Biomed Research International

De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism

(2013) Yan Wang et al.   BMC GENOMICS

Explaining intraspecific diversity in plant secondary metabolites in an ecological context

(2013) Ben D. Moore et al.   NEW PHYTOLOGIST

De Novo Transcriptome Assembly in Chili Pepper (Capsicum frutescens) to Identify Genes Involved in the Biosynthesis of Capsaicinoids

(2013) Shaoqun Liu et al.   PLoS One

Comparative analysis of de novo transcriptome assembly

(2013) Kaitlin Clarke et al.   Science China-Life Sciences

Strategies for transcriptome analysis in nonmodel plants

(2012) Judson A. Ward et al.   AMERICAN JOURNAL OF BOTANY

Flavonoid Biosynthesis Genes Putatively Identified in the Aromatic Plant Polygonum minus via Expressed Sequences Tag (EST) Analysis

(2012) Nur Diyana Roslan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome profiling of genes induced by salicylic acid and methyl jasmonate in Polygonum minus

(2012) Su-Fang Ee et al.   MOLECULAR BIOLOGY REPORTS

Identification of Natural Diterpenes that Inhibit Bacterial Wilt Disease in Tobacco, Tomato and Arabidopsis

(2012) Shigemi Seo et al.   PLANT AND CELL PHYSIOLOGY

De Novo Transcriptome of Safflower and the Identification of Putative Genes for Oleosin and the Biosynthesis of Flavonoids

(2012) Haiyan Li et al.   PLoS One

Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach

(2012) Marvin Mundry et al.   PLoS One

De novo characterization of the root transcriptome of a traditional Chinese medicinal plant Polygonum cuspidatum

(2012) DaCheng Hao et al.   Science China-Life Sciences

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

(2011) Yi Zheng et al.   BMC BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

Goldacre Review: Carotenoids in nature: insights from plants and beyond

(2011) Christopher I. Cazzonelli   FUNCTIONAL PLANT BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Analysis of the Chemical Composition of the Essential Oil of Polygonum minus Huds. Using Two-Dimensional Gas Chromatography-Time-of-Flight Mass Spectrometry (GC-TOF MS)

(2010) Syarul Nataqain Baharum et al.   MOLECULES

Jasmonate and ppHsystemin Regulate Key Malonylation Steps in the Biosynthesis of 17-Hydroxygeranyllinalool Diterpene Glycosides, an Abundant and Effective Direct Defense against Herbivores in Nicotiana attenuata

(2010) S. Heiling et al.   PLANT CELL

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY