YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
Authors
Keywords
-
Journal
GENOME RESEARCH
Volume 27, Issue 7, Pages 1139-1152
Publisher
Cold Spring Harbor Laboratory
Online
2017-05-24
DOI
10.1101/gr.215160.116
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus
- (2016) Emily M. Smith et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming
- (2016) Jonathan A. Beagan et al. Cell Stem Cell
- The second decade of 3C technologies: detailed insights into nuclear organization
- (2016) Annette Denker et al. GENES & DEVELOPMENT
- Principles Governing DNA Methylation during Neuronal Lineage and Subtype Specification
- (2016) Ali Sharma et al. JOURNAL OF NEUROSCIENCE
- Activation of proto-oncogenes by disruption of chromosome neighborhoods
- (2016) D. Hnisz et al. SCIENCE
- Neuronal CTCF Is Necessary for Basal and Experience-Dependent Gene Regulation, Memory Formation, and Genomic Structure of BDNF and Arc
- (2016) Dev Sharan Sams et al. Cell Reports
- Super-Enhancers at the Nanog Locus Differentially Regulate Neighboring Pluripotency-Associated Genes
- (2016) Steven Blinka et al. Cell Reports
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
- (2015) Ya Guo et al. CELL
- Ground State Conditions Induce Rapid Reorganization of Core Pluripotency Factor Binding before Global Epigenetic Reprogramming
- (2015) Christina Galonska et al. Cell Stem Cell
- CTCF Binding Polarity Determines Chromatin Looping
- (2015) Elzo de Wit et al. MOLECULAR CELL
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CTCF establishes discrete functional chromatin domains at theHoxclusters during differentiation
- (2015) Varun Narendra et al. SCIENCE
- Role of DNA Methylation in Modulating Transcription Factor Occupancy
- (2015) Matthew T. Maurano et al. Cell Reports
- Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
- (2015) Matteo Vietri Rudan et al. Cell Reports
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- Functional and topological characteristics of mammalian regulatory domains
- (2014) O. Symmons et al. GENOME RESEARCH
- Dual Effect of CTCF Loss on Neuroprogenitor Differentiation and Survival
- (2014) L. A. Watson et al. JOURNAL OF NEUROSCIENCE
- CTCF: an architectural protein bridging genome topology and function
- (2014) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells
- (2014) Yan Li et al. PLoS One
- Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes
- (2014) Petra C Schwalie et al. GENOME BIOLOGY
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency
- (2013) Gabriella Ficz et al. Cell Stem Cell
- Whole-Genome Bisulfite Sequencing of Two Distinct Interconvertible DNA Methylomes of Mouse Embryonic Stem Cells
- (2013) Ehsan Habibi et al. Cell Stem Cell
- YY1 controls Igκ repertoire and B-cell development, and localizes with condensin on the Igκ locus
- (2013) Xuan Pan et al. EMBO JOURNAL
- Flexible Long-Range Loops in the VH Gene Region of the Igh Locus Facilitate the Generation of a Diverse Antibody Repertoire
- (2013) Jasna Medvedovic et al. IMMUNITY
- Naive pluripotency is associated with global DNA hypomethylation
- (2013) Harry G Leitch et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Widespread plasticity in CTCF occupancy linked to DNA methylation
- (2012) H. Wang et al. GENOME RESEARCH
- 3C-based technologies to study the shape of the genome
- (2012) Wouter de Laat et al. METHODS
- Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation
- (2012) Erik Splinter et al. METHODS
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- A map of the cis-regulatory sequences in the mouse genome
- (2012) Yin Shen et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Self-organization of domain structures by DNA-loop-extruding enzymes
- (2012) E. Alipour et al. NUCLEIC ACIDS RESEARCH
- CTCF/cohesin-mediated DNA looping is required for protocadherin promoter choice
- (2012) Y. Guo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CTCF Is Required for Neural Development and Stochastic Expression of Clustered Pcdh Genes in Neurons
- (2012) Teruyoshi Hirayama et al. Cell Reports
- CTCF-mediated functional chromatin interactome in pluripotent cells
- (2011) Lusy Handoko et al. NATURE GENETICS
- Nestin Is Required for the Proper Self-Renewal of Neural Stem Cells
- (2010) Donghyun Park et al. STEM CELLS
- CTCF: Master Weaver of the Genome
- (2009) Jennifer E. Phillips et al. CELL
- Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
- (2009) Suzana Hadjur et al. NATURE
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
- (2008) Xi Chen et al. CELL
- Defining Molecular Cornerstones during Fibroblast to iPS Cell Reprogramming in Mouse
- (2008) Matthias Stadtfeld et al. Cell Stem Cell
- Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
- (2008) S. Cuddapah et al. GENOME RESEARCH
- The ground state of embryonic stem cell self-renewal
- (2008) Qi-Long Ying et al. NATURE
- Genome-scale DNA methylation maps of pluripotent and differentiated cells
- (2008) Alexander Meissner et al. NATURE
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started