Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
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Title
Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences
Authors
Keywords
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Journal
Frontiers in Plant Science
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2017-06-09
DOI
10.3389/fpls.2017.00900
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Note: Only part of the references are listed.- InfraPhenoGrid: A scientific workflow infrastructure for plant phenomics on the Grid
- (2017) Christophe Pradal et al. Future Generation Computer Systems-The International Journal of eScience
- Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
- (2017) Sarah Cohen-Boulakia et al. Future Generation Computer Systems-The International Journal of eScience
- Overcoming the Law of the Hidden in Cyberinfrastructures
- (2017) Alexander Bucksch et al. TRENDS IN PLANT SCIENCE
- Environmental Control of Root System Biology
- (2016) Rubén Rellán-Álvarez et al. Annual Review of Plant Biology
- Morphomechanical Innovation Drives Explosive Seed Dispersal
- (2016) Hugo Hofhuis et al. CELL
- Shifting foundations: the mechanical cell wall and development
- (2016) Siobhan A Braybrook et al. CURRENT OPINION IN PLANT BIOLOGY
- Expanding the phenotypic plasticity paradigm to broader views of trait space and ecological function
- (2016) Thomas J. DeWitt Current Zoology
- Climate and developmental plasticity: interannual variability in grapevine leaf morphology
- (2016) Daniel H Chitwood et al. PLANT PHYSIOLOGY
- Quantitative 3D Analysis of Plant Roots growing in Soil using Magnetic Resonance Imaging
- (2016) Dagmar van Dusschoten et al. PLANT PHYSIOLOGY
- Computer vision cracks the leaf code
- (2016) Peter Wilf et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell size and growth regulation in theArabidopsis thalianaapical stem cell niche
- (2016) Lisa Willis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Expanding the phenotypic plasticity paradigm to broader views of trait space and ecological function
- (2016) Thomas J. DeWitt Current Zoology
- A Bistable Switch Mechanism for Stem Cell Domain Nucleation in the Shoot Apical Meristem
- (2016) Dorjsuren Battogtokh et al. Frontiers in Plant Science
- Revealing plant cryptotypes: defining meaningful phenotypes among infinite traits
- (2015) Daniel H Chitwood et al. CURRENT OPINION IN PLANT BIOLOGY
- Utility of root cortical aerenchyma under water limited conditions in tropical maize (Zea mays L.)
- (2015) Joseph G. Chimungu et al. FIELD CROPS RESEARCH
- Harnessing Genetic Variation in Leaf Angle to Increase Productivity of Sorghum bicolor
- (2015) S. K. Truong et al. GENETICS
- The divining root: moisture-driven responses of roots at the micro- and macro-scale
- (2015) Neil E. Robbins et al. JOURNAL OF EXPERIMENTAL BOTANY
- The global spectrum of plant form and function
- (2015) Sandra Díaz et al. NATURE
- Multiscale Models in the Biomechanics of Plant Growth
- (2015) Oliver E. Jensen et al. PHYSIOLOGY
- Divergence in Patterns of Leaf Growth Polarity Is Associated with the Expression Divergence of miR396
- (2015) Mainak Das Gupta et al. PLANT CELL
- Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics
- (2015) Abhiram Das et al. Plant Methods
- Quantitative Trait Locus Mapping Reveals Regions of the Maize Genome Controlling Root System Architecture
- (2015) Paul R. Zurek et al. PLANT PHYSIOLOGY
- Root System Markup Language: Toward a Unified Root Architecture Description Language
- (2015) Guillaume Lobet et al. PLANT PHYSIOLOGY
- Genetic control of morphometric diversity in the maize shoot apical meristem
- (2015) Samuel Leiboff et al. Nature Communications
- Relationship between tree growth and physical dimensions of Fagus sylvatica crowns assessed from terrestrial laser scanning
- (2015) D Seidel et al. iForest-Biogeosciences and Forestry
- The ubiquity of phenotypic plasticity in plants: a synthesis
- (2015) Kattia Palacio-López et al. Ecology and Evolution
- Combining Lidar and Synthetic Aperture Radar Data to Estimate Forest Biomass: Status and Prospects
- (2015) Sanna Kaasalainen et al. Forests
- Diversity of Maize Shoot Apical Meristem Architecture and Its Relationship to Plant Morphology
- (2015) Addie M. Thompson et al. G3-Genes Genomes Genetics
- A Dynamical Phyllotaxis Model to Determine Floral Organ Number
- (2015) Miho S. Kitazawa et al. PLoS Computational Biology
- GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems
- (2015) Rubén Rellán-Álvarez et al. eLife
- DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots
- (2015) Olga Symonova et al. PLoS One
- The genetic basis of fruit morphology in horticultural crops: lessons from tomato and melon
- (2014) Antonio J. Monforte et al. JOURNAL OF EXPERIMENTAL BOTANY
- The ZmCLA4 gene in the qLA4-1 QTL controls leaf angle in maize (Zea mays L.)
- (2014) J. Zhang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Landmark-free statistical analysis of the shape of plant leaves
- (2014) Hamid Laga et al. JOURNAL OF THEORETICAL BIOLOGY
- A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis
- (2014) R. Slovak et al. PLANT CELL
- Resolving Distinct Genetic Regulators of Tomato Leaf Shape within a Heteroblastic and Ontogenetic Context
- (2014) D. H. Chitwood et al. PLANT CELL
- Image-Based High-Throughput Field Phenotyping of Crop Roots
- (2014) A. Bucksch et al. PLANT PHYSIOLOGY
- The Fiber Walk: A Model of Tip-Driven Growth with Lateral Expansion
- (2014) Alexander Bucksch et al. PLoS One
- Plant roots use a patterning mechanism to position lateral root branches toward available water
- (2014) Y. Bao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hybrid tree reconstruction from inhomogeneous point clouds
- (2014) Fabian Aiteanu et al. VISUAL COMPUTER
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- (2014) Wanneng Yang et al. Nature Communications
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- (2014) Alexander Bucksch Applications in Plant Sciences
- Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems
- (2013) Jonathan P. Lynch ANNALS OF BOTANY
- Image analysis is driving a renaissance in growth measurement
- (2013) Edgar P Spalding et al. CURRENT OPINION IN PLANT BIOLOGY
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- (2013) Yusaku Uga et al. NATURE GENETICS
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- (2013) M. Ron et al. PLANT PHYSIOLOGY
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- (2013) C. N. Topp et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Global Plants Initiative Celebrates its Achievements and Plans for the Future
- (2013) Deirdre Ryan TAXON
- Fast Automatic Precision Tree Models from Terrestrial Laser Scanner Data
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- GiA Roots: software for the high throughput analysis of plant root system architecture
- (2012) Taras Galkovskyi et al. BMC PLANT BIOLOGY
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- (2012) Fabio Fiorani et al. CURRENT OPINION IN BIOTECHNOLOGY
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- (2012) L. A. Miller et al. JOURNAL OF EXPERIMENTAL BIOLOGY
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- (2012) Robert MacPherson et al. JOURNAL OF MATHEMATICAL PHYSICS
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- (2012) Przemyslaw Prusinkiewicz et al. NEW PHYTOLOGIST
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- (2012) J. P. Lynch et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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- (2012) Daniel H. Chitwood et al. PLANT CELL
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- (2012) Leah R. Band et al. PLANT CELL
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- (2012) L. Remmler et al. PLANT PHYSIOLOGY
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- (2012) Valentina Baldazzi et al. TRENDS IN PLANT SCIENCE
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- (2011) Alexis Peaucelle et al. CURRENT BIOLOGY
- Multiscale modelling of auxin transport in the plant-root elongation zone
- (2011) L. R. Band et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Genome-wide association study of leaf architecture in the maize nested association mapping population
- (2011) Feng Tian et al. NATURE GENETICS
- Charles Darwin and the Origins of Plant Evolutionary Developmental Biology
- (2011) William E. Friedman et al. PLANT CELL
- Root Cortical Aerenchyma Enhances the Growth of Maize on Soils with Suboptimal Availability of Nitrogen, Phosphorus, and Potassium
- (2011) J. A. Postma et al. PLANT PHYSIOLOGY
- Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform
- (2011) R. T. Clark et al. PLANT PHYSIOLOGY
- A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture
- (2011) Guillaume Lobet et al. PLANT PHYSIOLOGY
- Reaction-Diffusion Pattern in Shoot Apical Meristem of Plants
- (2011) Hironori Fujita et al. PLoS One
- The iPlant Collaborative: Cyberinfrastructure for Plant Biology
- (2011) Stephen A. Goff et al. Frontiers in Plant Science
- Constraints of space in plant development
- (2010) Przemyslaw Prusinkiewicz et al. JOURNAL OF EXPERIMENTAL BOTANY
- A method to construct dose–response curves for a wide range of environmental factors and plant traits by means of a meta-analysis of phenotypic data
- (2010) Hendrik Poorter et al. JOURNAL OF EXPERIMENTAL BOTANY
- AN ARCHITECTURAL APPROACH TO THE COMPARATIVE ECOLOGY OF PLANT ROOT SYSTEMS
- (2010) A. H. FITTER NEW PHYTOLOGIST
- A Dynamic Model for Stem Cell Homeostasis and Patterning in Arabidopsis Meristems
- (2010) Tim Hohm et al. PLoS One
- Breeding Technologies to Increase Crop Production in a Changing World
- (2010) M. Tester et al. SCIENCE
- Quantitative trait loci mapping of leaf angle and leaf orientation value in maize (Zea mays L.)
- (2010) L. X. Ku et al. THEORETICAL AND APPLIED GENETICS
- Plant phenotypic plasticity in a changing climate
- (2010) A.B. Nicotra et al. TRENDS IN PLANT SCIENCE
- SkelTre
- (2010) Alexander Bucksch et al. VISUAL COMPUTER
- Self-organizing tree models for image synthesis
- (2009) Wojciech Palubicki et al. ACM TRANSACTIONS ON GRAPHICS
- WHEN SPEED TRULY MATTERS, OPENNESS IS THE ANSWER
- (2009) ANTONIO MARTURANO BIOETHICS
- Bisque: a platform for bioimage analysis and management
- (2009) Kristian Kvilekval et al. BIOINFORMATICS
- Discrete Laplace–Beltrami operators for shape analysis and segmentation
- (2009) Martin Reuter et al. COMPUTERS & GRAPHICS-UK
- Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants
- (2009) Christophe Godin et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- The power and control of gravitropic movements in plants: a biomechanical and systems biology view
- (2009) Bruno Moulia et al. JOURNAL OF EXPERIMENTAL BOTANY
- Root cortical aerenchyma improves the drought tolerance of maize (Zea maysL.)
- (2009) JINMING ZHU et al. PLANT CELL AND ENVIRONMENT
- Plasticity of Arabidopsis Root Gravitropism throughout a Multidimensional Condition Space Quantified by Automated Image Analysis
- (2009) T. L. Durham Brooks et al. PLANT PHYSIOLOGY
- Phenotypic Plasticity of Leaf Shape along a Temperature Gradient in Acer rubrum
- (2009) Dana L. Royer et al. PLoS One
- Natural Variation in Leaf Morphology Results from Mutation of a Novel KNOX Gene
- (2008) Seisuke Kimura et al. CURRENT BIOLOGY
- OpenAlea: a visual programming and component-based software platform for plant modelling
- (2008) Christophe Pradal et al. FUNCTIONAL PLANT BIOLOGY
- Dissecting apple tree architecture into genetic, ontogenetic and environmental effects: mixed linear modelling of repeated spatial and temporal measures
- (2008) Vincent Segura et al. NEW PHYTOLOGIST
- Combined Genetic and Modeling Approaches Reveal That Epidermal Cell Area and Number in Leaves Are Controlled by Leaf and Plant Developmental Processes in Arabidopsis
- (2008) S. Tisne et al. PLANT PHYSIOLOGY
- From Genotype to Phenotype: Systems Biology Meets Natural Variation
- (2008) P. N. Benfey et al. SCIENCE
- Developmental Patterning by Mechanical Signals in Arabidopsis
- (2008) O. Hamant et al. SCIENCE
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