Modelling root–soil interactions using three–dimensional models of root growth, architecture and function

Choosing a Mixture Ratio for the On-Farm Production of AM Fungus Inoculum In Mixtures of Compost and Vermiculite

(2013) David D. Douds et al.   COMPOST SCIENCE & UTILIZATION

Complementarity in root architecture for nutrient uptake in ancient maize/bean and maize/bean/squash polycultures

(2012) Johannes A. Postma et al.   ANNALS OF BOTANY

A mathematical model for investigating the effect of cluster roots on plant nutrient uptake

(2012) K. C. Zygalakis et al.   European Physical Journal-Special Topics

Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography

(2012) R. J. Flavel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root system architecture: insights from Arabidopsis and cereal crops

(2012) S. Smith et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

New roots for agriculture: exploiting the root phenome

(2012) J. P. Lynch et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Root elongation is restricted by axial but not by radial pressures: so what happens in field soil?

(2012) A. Glyn Bengough   PLANT AND SOIL

RootScan: Software for high-throughput analysis of root anatomical traits

(2012) Amy L. Burton et al.   PLANT AND SOIL

Parameterizing a Dynamic Architectural Model of the Root System of Spring Barley from Minirhizotron Data

(2012) S. Garré et al.   VADOSE ZONE JOURNAL

Modeling Phosphorus Uptake by a Growing and Exuding Root System

(2012) A. Schnepf et al.   VADOSE ZONE JOURNAL

Root Water Uptake as Simulated by Three Soil Water Flow Models

(2012) Peter de Willigen et al.   VADOSE ZONE JOURNAL

A functional–structural model of rice linking quantitative genetic information with morphological development and physiological processes

(2011) Lifeng Xu et al.   ANNALS OF BOTANY

Simulation of wheat growth using the 3D root architecture model SPACSYS: Validation and sensitivity analysis

(2011) Ian J. Bingham et al.   EUROPEAN JOURNAL OF AGRONOMY

Symbiont identity matters: carbon and phosphorus fluxes between Medicago truncatula and different arbuscular mycorrhizal fungi

(2011) Mark Lendenmann et al.   MYCORRHIZA

A dual porosity model of nutrient uptake by root hairs

(2011) K. C. Zygalakis et al.   NEW PHYTOLOGIST

Biomass allocation to leaves, stems and roots: meta-analyses of interspecific variation and environmental control

(2011) Hendrik Poorter et al.   NEW PHYTOLOGIST

A tool to model 3D coarse-root development with annual resolution

(2011) Bettina Wagner et al.   PLANT AND SOIL

Phenotypic variability and modelling of root structure of wild Lupinus angustifolius genotypes

(2011) Ying Long Chen et al.   PLANT AND SOIL

Acquisition of phosphorus and other poorly mobile nutrients by roots. Where do plant nutrition models fail?

(2011) Philippe Hinsinger et al.   PLANT AND SOIL

Links between root developmental traits and foraging performance

(2011) LOÏC PAGÈS   PLANT CELL AND ENVIRONMENT

Phosphorus Nutrition of Proteaceae in Severely Phosphorus-Impoverished Soils: Are There Lessons To Be Learned for Future Crops?

(2011) H. Lambers et al.   PLANT PHYSIOLOGY

Root Cortical Aerenchyma Enhances the Growth of Maize on Soils with Suboptimal Availability of Nitrogen, Phosphorus, and Potassium

(2011) J. A. Postma et al.   PLANT PHYSIOLOGY

Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform

(2011) R. T. Clark et al.   PLANT PHYSIOLOGY

Root Phenes for Enhanced Soil Exploration and Phosphorus Acquisition: Tools for Future Crops

(2011) J. P. Lynch   PLANT PHYSIOLOGY

Rhizosphere interactions between microorganisms and plants govern iron and phosphorus acquisition along the root axis – model and research methods

(2011) Petra Marschner et al.   SOIL BIOLOGY & BIOCHEMISTRY

A functional–structural modelling approach to autoregulation of nodulation

(2010) Liqi Han et al.   ANNALS OF BOTANY

Theoretical evidence for the functional benefit of root cortical aerenchyma in soils with low phosphorus availability

(2010) Johannes A. Postma et al.   ANNALS OF BOTANY

The utility of phenotypic plasticity of root hair length for phosphorus acquisition

(2010) Jinming Zhu et al.   FUNCTIONAL PLANT BIOLOGY

Genetic variability for root morph-architecture traits and root growth dynamics as related to phosphorus efficiency in soybean

(2010) Junhua Ao et al.   FUNCTIONAL PLANT BIOLOGY

Why work and discuss the basic principles of plant modelling 50 years after the first plant models?

(2010) F. Tardieu   JOURNAL OF EXPERIMENTAL BOTANY

Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils

(2010) Xavier Draye et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root growth models: towards a new generation of continuous approaches

(2010) Lionel Dupuy et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits

(2010) A. Glyn Bengough et al.   JOURNAL OF EXPERIMENTAL BOTANY

The algorithmic beauty of plant roots – an L-System model for dynamic root growth simulation

(2010) Daniel Leitner et al.   MATHEMATICAL AND COMPUTER MODELLING OF DYNAMICAL SYSTEMS

Reconciling root plasticity and architectural ground rules in tree root growth models with voxel automata

(2010) Rachmat Mulia et al.   PLANT AND SOIL

A one-dimensional model of water flow in soil-plant systems based on plant architecture

(2010) Michael Janott et al.   PLANT AND SOIL

Traits related to differences in function among three arbuscular mycorrhizal fungi

(2010) Cécile Thonar et al.   PLANT AND SOIL

Incorporating 2D tree-ring data in 3D laser scans of coarse-root systems

(2010) Bettina Wagner et al.   PLANT AND SOIL

A dynamic root system growth model based on L-Systems

(2010) Daniel Leitner et al.   PLANT AND SOIL

Identifying fertiliser management strategies to maximise nitrogen and phosphorus acquisition by wheat in two contrasting soils from Victoria, Australia

(2009) V. M. Dunbabin et al.   AUSTRALIAN JOURNAL OF SOIL RESEARCH

Assess suitability of hydroaeroponic culture to establish tripartite symbiosis between different AMF species, beans, and rhizobia

(2009) Fatma Tajini et al.   BMC PLANT BIOLOGY

The power of simulating experiments

(2009) Katrin M. Meyer et al.   ECOLOGICAL MODELLING

Root phenomics of crops: opportunities and challenges

(2009) Peter J. Gregory et al.   FUNCTIONAL PLANT BIOLOGY

Functional diversity in arbuscular mycorrhiza – the role of gene expression, phosphorous nutrition and symbiotic efficiency

(2009) Nadja Feddermann et al.   Fungal Ecology

Functional–structural plant modelling: a new versatile tool in crop science

(2009) J. Vos et al.   JOURNAL OF EXPERIMENTAL BOTANY

Is it good noise? The role of developmental instability in the shaping of a root system

(2009) B. G. Forde   JOURNAL OF EXPERIMENTAL BOTANY

Derivation of a macroscopic model for nutrient uptake by hairy-roots

(2009) Mariya Ptashnyk   NONLINEAR ANALYSIS-REAL WORLD APPLICATIONS

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

Wheat, canola and grain legume access to soil phosphorus fractions differs in soils with contrasting phosphorus dynamics

(2009) Terry J. Rose et al.   PLANT AND SOIL

Combined MRI-PET dissects dynamic changes in plant structures and functions

(2009) Siegfried Jahnke et al.   PLANT JOURNAL

Tree roots as self-similar branching structures: axis differentiation and segment tapering in coarse roots of three boreal forest tree species

(2009) Tuomo Kalliokoski et al.   TREES-STRUCTURE AND FUNCTION

Implementation of a Microscopic Soil–Root Hydraulic Conductivity Drop Function in a Three-Dimensional Soil–Root Architecture Water Transfer Model

(2009) Tom Schröder et al.   VADOSE ZONE JOURNAL

A grid refinement approach for a three-dimensional soil-root water transfer model

(2009) T. Schröder et al.   WATER RESOURCES RESEARCH

The large-effect drought-resistance QTL qtl12.1 increases water uptake in upland rice

(2008) Jérôme Bernier et al.   FIELD CROPS RESEARCH

OpenAlea: a visual programming and component-based software platform for plant modelling

(2008) Christophe Pradal et al.   FUNCTIONAL PLANT BIOLOGY

PlantGL: A Python-based geometric library for 3D plant modelling at different scales

(2008) C. Pradal et al.   GRAPHICAL MODELS

Mathematical models of plant-soil interaction

(2008) T. Roose et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

The solution of convection–diffusion equations for solute transport to plant roots

(2008) T. Roose et al.   PLANT AND SOIL

Plant nutrient-acquisition strategies change with soil age

(2008) H LAMBERS et al.   TRENDS IN ECOLOGY & EVOLUTION

Effect of Local Soil Hydraulic Conductivity Drop Using a Three-Dimensional Root Water Uptake Model

(2008) Tom Schröder et al.   VADOSE ZONE JOURNAL

Quantitative Imaging of Infiltration, Root Growth, and Root Water Uptake via Neutron Radiography

(2008) Sascha E. Oswald et al.   VADOSE ZONE JOURNAL

Use of a Three-Dimensional Detailed Modeling Approach for Predicting Root Water Uptake

(2008) Mathieu Javaux et al.   VADOSE ZONE JOURNAL

Growth model for arbuscular mycorrhizal fungi

(2007) A Schnepf et al.   Journal of the Royal Society Interface