Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant

Expression of Arabidopsis class 1 phytoglobin (AtPgb1) delays death and degradation of the root apical meristem during severe PEG-induced water deficit

(2017) Mohamed M Mira et al.   JOURNAL OF EXPERIMENTAL BOTANY

5′ to 3′ mRNA Decay Contributes to the Regulation of Arabidopsis Seed Germination by Dormancy

(2017) Isabelle Basbouss-Serhal et al.   PLANT PHYSIOLOGY

Transcriptional mechanisms associated with seed dormancy and dormancy loss in the gibberellin-insensitive sly1-2 mutant of Arabidopsis thaliana

(2017) Sven K. Nelson et al.   PLoS One

DELLA-mediated PIF degradation contributes to coordination of light and gibberellin signalling in Arabidopsis

(2016) Kunlun Li et al.   Nature Communications

Nitric Oxide and Reactive Oxygen Species Mediate Metabolic Changes in Barley Seed Embryo during Germination

(2016) Zhenguo Ma et al.   Frontiers in Plant Science

Dormant and after-Ripened Arabidopsis thaliana Seeds are Distinguished by Early Transcriptional Differences in the Imbibed State

(2016) Bas J. W. Dekkers et al.   Frontiers in Plant Science

Fluctuation of Arabidopsis seed dormancy with relative humidity and temperature during dry storage

(2015) Isabelle Basbouss-Serhal et al.   JOURNAL OF EXPERIMENTAL BOTANY

Loss ofArabidopsis thalianaSeed Dormancy is Associated with Increased Accumulation of the GID1 GA Hormone Receptors

(2015) Amber L. Hauvermale et al.   PLANT AND CELL PHYSIOLOGY

Dormancy in cereals (not too much, not so little): about the mechanisms behind this trait

(2015) María V. Rodríguez et al.   SEED SCIENCE RESEARCH

Independent and interactive effects of DOF affecting germination 1 (DAG1) and the Della proteins GA insensitive (GAI) and Repressor of ga1-3(RGA) in embryo development and seed germination

(2014) Alessandra Boccaccini et al.   BMC PLANT BIOLOGY

Translatome profiling in dormant and nondormant sunflower (Helianthus annuus) seeds highlights post-transcriptional regulation of germination

(2014) Elodie Layat et al.   NEW PHYTOLOGIST

ArrayExpress update—simplifying data submissions

(2014) Nikolay Kolesnikov et al.   NUCLEIC ACIDS RESEARCH

HISTONE DEACETYLASE 9 represses seedling traits inArabidopsis thalianadry seeds

(2014) Martijn van Zanten et al.   PLANT JOURNAL

After-Ripening Induced Transcriptional Changes of Hormonal Genes in Wheat Seeds: The Cases of Brassinosteroids, Ethylene, Cytokinin and Salicylic Acid

(2014) Vijaya R. Chitnis et al.   PLoS One

Is Gene Transcription Involved in Seed Dry After-Ripening?

(2014) Patrice Meimoun et al.   PLoS One

Seed dormancy and germination—emerging mechanisms and new hypotheses

(2014) Hiroyuki Nonogaki   Frontiers in Plant Science

Dynamic Proteomics Emphasizes the Importance of Selective mRNA Translation and Protein Turnover duringArabidopsisSeed Germination

(2013) Marc Galland et al.   MOLECULAR & CELLULAR PROTEOMICS

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

PlantGSEA: a gene set enrichment analysis toolkit for plant community

(2013) Xin Yi et al.   NUCLEIC ACIDS RESEARCH

ArabidopsisPaired Amphipathic Helix Proteins SNL1 and SNL2 Redundantly Regulate Primary Seed Dormancy via Abscisic Acid–Ethylene Antagonism Mediated by Histone Deacetylation

(2013) Zhi Wang et al.   PLANT CELL

Combining association mapping and transcriptomics identifyHD2Bhistone deacetylase as a genetic factor associated with seed dormancy inArabidopsis thaliana

(2013) Ryoichi Yano et al.   PLANT JOURNAL

Lifting DELLA Repression of Arabidopsis Seed Germination by Nonproteolytic Gibberellin Signaling

(2013) T. Ariizumi et al.   PLANT PHYSIOLOGY

Salinity induced the changes of root growth and antioxidative responses in two wheat cultivars

(2013) Jing Zhang et al.   PROTOPLASMA

AraPath: a knowledgebase for pathway analysis in Arabidopsis

(2012) L. Lai et al.   BIOINFORMATICS

HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis

(2012) Ming Luo et al.   JOURNAL OF EXPERIMENTAL BOTANY

A KH Domain-Containing Putative RNA-Binding Protein Is Critical for Heat Stress-Responsive Gene Regulation and Thermotolerance in Arabidopsis

(2012) Qingmei Guan et al.   Molecular Plant

A Circadian Clock- and PIF4-Mediated Double Coincidence Mechanism is Implicated in the Thermosensitive Photoperiodic Control of Plant Architectures in Arabidopsis thaliana

(2012) Yuichi Nomoto et al.   PLANT AND CELL PHYSIOLOGY

Molecular mechanisms of seed dormancy

(2012) KAI GRAEBER et al.   PLANT CELL AND ENVIRONMENT

Gibberellin Signaling: A Theme and Variations on DELLA Repression

(2012) A. L. Hauvermale et al.   PLANT PHYSIOLOGY

RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

(2011) Tomas Hruz et al.   BMC GENOMICS

RNA-directed DNA methylation

(2011) Huiming Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

A conceptual framework for the evolution of ecological specialisation

(2011) Timothée Poisot et al.   ECOLOGY LETTERS

Oxygen and nitric oxide rebinding kinetics in nonsymbiotic hemoglobin AHb1 from Arabidopsis thaliana

(2011) Stefania Abbruzzetti et al.   IUBMB LIFE

DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana

(2011) GEORGE C. K. CHIANG et al.   MOLECULAR ECOLOGY

Functional genomics of family 1 glycosyltransferases in Arabidopsis

(2011) Keiko Yonekura-Sakakibara   Plant Biotechnology

Induction of Dormancy in Arabidopsis Summer Annuals Requires Parallel Regulation of DOG1 and Hormone Metabolism by Low Temperature and CBF Transcription Factors

(2011) S. L. Kendall et al.   PLANT CELL

Targeted mRNA Oxidation Regulates Sunflower Seed Dormancy Alleviation during Dry After-Ripening

(2011) Jérémie Bazin et al.   PLANT CELL

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

(2010) Li-Ting Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional Diversification and Functional Conservation between DELLA Proteins in Arabidopsis

(2010) J. Gallego-Bartolome et al.   MOLECULAR BIOLOGY AND EVOLUTION

AGRIS: the Arabidopsis Gene Regulatory Information Server, an update

(2010) A. Yilmaz et al.   NUCLEIC ACIDS RESEARCH

A Rice gid1 Suppressor Mutant Reveals That Gibberellin Is Not Always Required for Interaction between Its Receptor, GID1, and DELLA Proteins

(2010) Y. Yamamoto et al.   PLANT CELL

The Role of Two F-Box Proteins, SLEEPY1 and SNEEZY, in Arabidopsis Gibberellin Signaling

(2010) T. Ariizumi et al.   PLANT PHYSIOLOGY

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Biochemical Insights on Degradation of Arabidopsis DELLA Proteins Gained From a Cell-Free Assay System

(2009) F. Wang et al.   PLANT CELL

VirtualPlant: A Software Platform to Support Systems Biology Research

(2009) M. S. Katari et al.   PLANT PHYSIOLOGY

Major flowering time gene,FLOWERING LOCUS C, regulates seed germination inArabidopsis thaliana

(2009) George C. K. Chiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Aspects of Seed Dormancy

(2008) Ruth Finkelstein et al.   Annual Review of Plant Biology

Effects of dependence in high-dimensional multiple testing problems

(2008) Kyung In Kim et al.   BMC BIOINFORMATICS

LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana

(2008) Michaela Hundertmark et al.   BMC GENOMICS

A molecular framework for light and gibberellin control of cell elongation

(2008) Miguel de Lucas et al.   NATURE

Coordinated regulation of Arabidopsis thaliana development by light and gibberellins

(2008) Suhua Feng et al.   NATURE

Proteolysis-Independent Downregulation of DELLA Repression in Arabidopsis by the Gibberellin Receptor GIBBERELLIN INSENSITIVE DWARF1

(2008) T. Ariizumi et al.   PLANT CELL