Influence of Igneous Basement on Deep Sediment Microbial Diversity on the Eastern Juan de Fuca Ridge Flank

Comparative Single-Cell Genomics of Chloroflexi from the Okinawa Trough Deep-Subsurface Biosphere

(2016) Heather Fullerton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Deep Crustal Communities of the Juan de Fuca Ridge Are Governed by Mineralogy

(2016) Amy R. Smith et al.   GEOMICROBIOLOGY JOURNAL

Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt

(2016) Sean P Jungbluth et al.   ISME Journal

Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi ) in Sulfur Cycling

(2016) Kenneth Wasmund et al.   mBio

A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge

(2016) Julie L. Meyer et al.   Scientific Reports

Temperature and Redox Effect on Mineral Colonization in Juan de Fuca Ridge Flank Subsurface Crustal Fluids

(2016) Jean-Paul M. Baquiran et al.   Frontiers in Microbiology

Diversity and Metabolic Potentials of Subsurface Crustal Microorganisms from the Western Flank of the Mid-Atlantic Ridge

(2016) Xinxu Zhang et al.   Frontiers in Microbiology

Microbial Inventory of Deeply Buried Oceanic Crust from a Young Ridge Flank

(2016) Steffen L. Jørgensen et al.   Frontiers in Microbiology

Anaerobic Fungi: A Potential Source of Biological H2 in the Oceanic Crust

(2016) Magnus Ivarsson et al.   Frontiers in Microbiology

Presence of oxygen and aerobic communities from sea floor to basement in deep-sea sediments

(2015) Steven D’Hondt et al.   Nature Geoscience

Exploring deep microbial life in coal-bearing sediment down to  2.5 km below the ocean floor

(2015) F. Inagaki et al.   SCIENCE

Sustainability and dynamics of outcrop-to-outcrop hydrothermal circulation

(2015) Dustin M. Winslow et al.   Nature Communications

Abundant Atribacteria in deep marine sediment from the Adélie Basin, Antarctica

(2015) Stephanie A. Carr et al.   Frontiers in Microbiology

Microbial Communities on Seafloor Basalts at Dorado Outcrop Reflect Level of Alteration and Highlight Global Lithic Clades

(2015) Michael D. Lee et al.   Frontiers in Microbiology

A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types

(2015) Mark A. Lever et al.   Frontiers in Microbiology

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin

(2014) Anne-Kristin Kaster et al.   ISME Journal

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Seawater recharge into oceanic crust: IODP Exp 327 Site U1363 Grizzly Bare outcrop

(2013) C. Geoffrey Wheat et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Actinobacteria—An Ancient Phylum Active in Volcanic Rock Weathering

(2013) Charles S. Cockell et al.   GEOMICROBIOLOGY JOURNAL

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

Microbial life under extreme energy limitation

(2013) Tori M. Hoehler et al.   NATURE REVIEWS MICROBIOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt

(2013) M. A. Lever et al.   SCIENCE

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

(2013) Jeremy A. Dodsworth et al.   Nature Communications

Oxygen consumption rates in subseafloor basaltic crust derived from a reaction transport model

(2013) Beth N. Orcutt et al.   Nature Communications

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Interstitial fluid chemistry of sediments underlying the North Atlantic gyre and the influence of subsurface fluid flow

(2012) Wiebke Ziebis et al.   EARTH AND PLANETARY SCIENCE LETTERS

Functional gene surveys from ocean drilling expeditions - a review and perspective

(2012) Mark A. Lever   FEMS MICROBIOLOGY ECOLOGY

Inorganic chemistry, gas compositions and dissolved organic carbon in fluids from sedimented young basaltic crust on the Juan de Fuca Ridge flanks

(2012) Huei-Ting Lin et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland

(2012) Viggó Thór Marteinsson et al.   ISME Journal

Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank

(2012) Sean P Jungbluth et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aerobic Microbial Respiration in 86-Million-Year-Old Deep-Sea Red Clay

(2012) H. Roy et al.   SCIENCE

Microbial diversity and stratification of South Pacific abyssal marine sediments

(2011) Alan M. Durbin et al.   ENVIRONMENTAL MICROBIOLOGY

In situ enrichment of ocean crust microbes on igneous minerals and glasses using an osmotic flow-through device

(2011) Amy Smith et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

New cell extraction procedure applied to deep subsurface sediments

(2011) Jens Kallmeyer et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Carbon and nitrogen assimilation in deep subseafloor microbial cells

(2011) Y. Morono et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acetogenesis in Deep Subseafloor Sediments of The Juan de Fuca Ridge Flank: A Synthesis of Geochemical, Thermodynamic, and Gene-based Evidence

(2010) Mark A. Lever et al.   GEOMICROBIOLOGY JOURNAL

Tapping the Subsurface Ocean Crust Biosphere: Low Biomass and Drilling-Related Contamination Calls for Improved Quality Controls

(2010) Cara M. Santelli et al.   GEOMICROBIOLOGY JOURNAL

Colonization of subsurface microbial observatories deployed in young ocean crust

(2010) Beth N Orcutt et al.   ISME Journal

Variations in Archaeal and Bacterial Diversity Associated with the Sulfate-Methane Transition Zone in Continental Margin Sediments (Santa Barbara Basin, California)

(2009) B. K. Harrison et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteria in Weathered Basaltic Glass, Iceland

(2009) Charles S. Cockell et al.   GEOMICROBIOLOGY JOURNAL

Subseafloor sedimentary life in the South Pacific Gyre

(2009) Steven D'Hondt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fluids from the Oceanic Crust Support Microbial Activities within the Deep Biosphere

(2008) Bert Engelen et al.   GEOMICROBIOLOGY JOURNAL

Microbiological Assessment of Circulation Mud Fluids During the First Operation of Riser Drilling by the Deep-Earth Research VesselChikyu

(2008) Noriaki Masui et al.   GEOMICROBIOLOGY JOURNAL

Prokaryotic diversity, distribution and insights into their role in biogeochemical cycling in marine basalts

(2008) Olivia U Mason et al.   ISME Journal

Abundance and diversity of microbial life in ocean crust

(2008) Cara M. Santelli et al.   NATURE

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA